Browse Element(s) Details


Os.52572.1.S1_at

Description gb:AK068079.1
DB_XREF= gi:32978097
TID=Os.52572.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130J22, full insert sequence.
FL= gb:AK068079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g319709/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52572.1.S1_at--578--7511Chr10:16470295..16470319 (25 bp)
GTGGAGAGGTTTAATGACCCTGAAA
LOC_Os10g31970
Os.52572.1.S1_at--230--5591Chr10:16470330..16470354 (25 bp)
GAAATGCACATTGATATCTACTCGT
LOC_Os10g31970
Os.52572.1.S1_at--637--6511Chr10:16470342..16470655 (25 bp)
GATATCTACTCGTGCTGGATCTCTA
LOC_Os10g31970
Os.52572.1.S1_at--10--2011NONE
ACTCGTGCTGGATCTCTAGGCATTA
NONE
Os.52572.1.S1_at--468--7971NONE
GGATCTCTAGGCATTAACCTTCATT
NONE
Os.52572.1.S1_at--247--10551Chr10:16470377..16470401 (25 bp)
TTCATTCAGCAAACCGTGTGATTCT
LOC_Os10g31970
Os.52572.1.S1_at--914--5131Chr10:16470385..16470409 (25 bp)
GCAAACCGTGTGATTCTTCTTGATG
LOC_Os10g31970
Os.52572.1.S1_at--412--10571Chr10:16470398..16470422 (25 bp)
TTCTTCTTGATGGTTCATGGAATCC
LOC_Os10g31970
Os.52572.1.S1_at--561--8511Chr10:16470415..16470439 (25 bp)
TGGAATCCAACCCATGATTTGCAAG
LOC_Os10g31970
Os.52572.1.S1_at--426--6531Chr10:16470430..16470454 (25 bp)
GATTTGCAAGCCATCTATCGGGTTT
LOC_Os10g31970
Os.52572.1.S1_at--587--10731Chr10:16470433..16470457 (25 bp)
TTGCAAGCCATCTATCGGGTTTGGA
LOC_Os10g31970
Target Sequence 
GTGGAGAGGTTTAATGACCCTGAAAACATTAGAGTGAAATGCACATTGATATCTACTCGTGCTGGATCTCTAGGCATTAA
CCTTCATTCAGCAAACCGTGTGATTCTTCTTGATGGTTCATGGAATCCAACCCATGATTTGCAAGCCATCTATCGGGTTT
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis