Browse Element(s) Details


OsAffx.30631.2.S1_at

Description tigr:9638.m02773
TID=OsAffx.30631.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3199011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30631.2.S1_at--596--7331Chr10:16476862..16476886 (25 bp)
GTGCAGGGCTATGCAACGGCACTAG
LOC_Os10g31990
OsAffx.30631.2.S1_at--325--8251Chr10:16476845..16476869 (25 bp)
GGCACTAGAATGACAATTACGCGAC
LOC_Os10g31990
OsAffx.30631.2.S1_at--937--111Chr10:16476830..16476854 (25 bp)
ATTACGCGACTAGGCAATAAGGTTA
LOC_Os10g31990
OsAffx.30631.2.S1_at--143--10171Chr10:16476792..16476816 (25 bp)
TATAACTGGAACACACAGCGGCGAT
LOC_Os10g31990
OsAffx.30631.2.S1_at--137--3311Chr10:16476781..16476805 (25 bp)
CACACAGCGGCGATATGGTATGTAT
LOC_Os10g31990
OsAffx.30631.2.S1_at--611--351Chr10:16476746..16476770 (25 bp)
ATCATGTCACCAACCGAACCGAAAT
LOC_Os10g31990
OsAffx.30631.2.S1_at--699--5571Chr10:16476726..16476750 (25 bp)
GAAATGGCCGTTCATGCTAAACAGA
LOC_Os10g31990
OsAffx.30631.2.S1_at--23--10051Chr10:16476615..16476639 (25 bp)
TAGGCAAGTTTTCACCCACGGGCAG
LOC_Os10g31990
OsAffx.30631.2.S1_at--151--4371Chr10:16476600..16476624 (25 bp)
CCACGGGCAGCTCTATGTGGCAGTC
LOC_Os10g31990
OsAffx.30631.2.S1_at--422--8431Chr10:16476554..16476578 (25 bp)
GGCCTGAAGATCTTGATCGCCGACG
LOC_Os10g31990
OsAffx.30631.2.S1_at--456--6371Chr10:16476540..16476564 (25 bp)
GATCGCCGACGAAGAATGCCCGGGT
LOC_Os10g31990
Target Sequence 
GTGCAGGGCTATGCAACGGCACTAGAATGACAATTACGCGACTAGGCAATAAGGTTATTGAGGCACAGATTATAACTGGA
ACACACAGCGGCGATATGGTATGTATCCCACAAATCATCATGTCACCAACCGAACCGAAATGGCCGTTCATGCTAAACAG
AAAGCAATTTCCCCTCTCGGTGTGTTTTGCCATGACGATCAACAAGAGTCAGGGGCAAACTCTAAACAAGGTCGGCCTCT
ATTTACCTAGGCAAGTTTTCACCCACGGGCAGCTCTATGTGGCAGTCTCCAGAGTCACAAGCAGAGATGGCCTGAAGATC
TTGATCGCCGACGAAGAATGCCCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30631.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis