Browse Element(s) Details


OsAffx.20283.1.S1_at

Description tigr:9638.m02778
TID=OsAffx.20283.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3204010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein
LOC_Os10g32080OsAffx.18485.3.S1_at11/1110+16522643..16524163Exostosin family protein
LOC_Os10g32090OsAffx.30633.1.S1_at11/1110+16524730..16525308hypothetical protein
LOC_Os10g32100NANA10+16527337..16527957hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20283.1.S1_at--336--6771Chr10:16506236..16506260 (25 bp)
GTTACATAGCCGATGACCACGCCAA
LOC_Os10g32040
OsAffx.20283.1.S1_at--258--8011Chr10:16506210..16506234 (25 bp)
GGAGGAACGCCAACTCTAGCTCGAG
LOC_Os10g32040
OsAffx.20283.1.S1_at--1113--9411Chr10:16506167..16506191 (25 bp)
TCGTGATGGCAAACACGCTGGCCTT
LOC_Os10g32040
OsAffx.20283.1.S1_at--162--10651Chr10:16506108..16506132 (25 bp)
TTCGCCGGGACACCAACGGTAGAGT
LOC_Os10g32040
OsAffx.20283.1.S1_at--131--10031Chr10:16506089..16506113 (25 bp)
TAGAGTTGCCGATGCGCTACACGCA
LOC_Os10g32040
OsAffx.20283.1.S1_at--205--5111Chr10:16506067..16506091 (25 bp)
GCACTACAATATCTCCATCTGGCTG
LOC_Os10g32040
OsAffx.20283.1.S1_at--533--491Chr10:16506051..16506075 (25 bp)
ATCTGGCTGTCTCTGAACGCGGTAG
LOC_Os10g32040
OsAffx.20283.1.S1_at--198--2611Chr10:16506036..16506060 (25 bp)
AACGCGGTAGGATCCTTGCCAATAG
LOC_Os10g32040
OsAffx.20283.1.S1_at--1133--711Chr10:16505988..16506012 (25 bp)
ATGATCACTCCGGTTGCTGCCAAGA
LOC_Os10g32040
OsAffx.20283.1.S1_at--284--5031Chr10:16505956..16505979 (24 bp)
GCAGTCATCGTGGTGATTCTCTCGA
LOC_Os10g32040
OsAffx.20283.1.S1_at--728--6571NONE
GATTCTCTCGAGCATCAATCAGGCT
NONE
Target Sequence 
GTTACATAGCCGATGACCACGCCAACGGAGGAACGCCAACTCTAGCTCGAGCGAAGCAATTCCAAGGGTTCGTGATGGCA
AACACGCTGGCCTTCTTCTGCTCGTCGTTGGCCGTCCTGAGCCTTGTGTTCGCCGGGACACCAACGGTAGAGTTGCCGAT
GCGCTACACGCACTACAATATCTCCATCTGGCTGTCTCTGAACGCGGTAGGATCCTTGCCAATAGCCTTTGCAATAGCTG
TTTATATCATGATCACTCCGGTTGCTGCCAAGACCTCTCCTGCAGTCATCGTGGTGATTCTCTCGAGCATCAATCAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis