Browse Element(s) Details


Os.46821.2.S1_at

Description gb:NM_196838.1
DB_XREF= gi:37535035
TID=Os.46821.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0011A08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0011A08.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g320207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46821.2.S1_at--519--9671NONE
TCAGCGCTCCAGGTAATGATAATTT
NONE
Os.46821.2.S1_at--927--4551NONE
GCGCTCCAGGTAATGATAATTTTCC
NONE
Os.46821.2.S1_at--173--6431Chr10:16494281..16494305 (25 bp)
GATAATTTTCCTGGGATATTTGACC
LOC_Os10g32020
Os.46821.2.S1_at--985--9212Chr10:16494319..16494343 (25 bp)
TCTTTTTAAAGATTTAGGGCCTGAT
LOC_Os10g32020
Os.46821.2.S1_at--874--6531Chr10:16494329..16494353 (25 bp)
GATTTAGGGCCTGATCCATATGACA
LOC_Os10g32020
Os.46821.2.S1_at--77--7571Chr10:16494335..16494359 (25 bp)
GGGCCTGATCCATATGACAGTTCTT
LOC_Os10g32020
Os.46821.2.S1_at--297--6371Chr10:16494341..16494365 (25 bp)
GATCCATATGACAGTTCTTGCTTTT
LOC_Os10g32020
Os.46821.2.S1_at--799--5651Chr10:16494350..16494370 (21 bp)
GACAGTTCTTGCTTTTGGATGCTCC
LOC_Os10g32020
Os.46821.2.S1_at--166--1231Chr10:16494353..16494735 (25 bp)
AGTTCTTGCTTTTGGATGCTCCATG
LOC_Os10g32020
Os.46821.2.S1_at--481--4891NONE
GCTTTTGGATGCTCCATGTACAAGA
NONE
Os.46821.2.S1_at--1093--6331NONE
GATGCTCCATGTACAAGAGAATCAC
NONE
Target Sequence 
TCAGCGCTCCAGGTAATGATAATTTTCCTGGGATATTTGACCCCATTACCTCTTTTCTTTTTAAAGATTTAGGGCCTGAT
CCATATGACAGTTCTTGCTTTTGGATGCTCCATGTACAAGAGAATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46821.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis