Browse Element(s) Details


Os.50631.1.S1_at

Description gb:NM_196833.1
DB_XREF= gi:37535025
TID=Os.50631.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50631 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc finger helicase (OSJNBa0018F16.23), mRNA.
PROD=putative zinc finger helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3197011/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50631.1.S1_at--243--6631Chr10:16470847..16470871 (25 bp)
GTTGGGACTGAGAAGCCACCTACTC
LOC_Os10g31970
Os.50631.1.S1_at--122--7351Chr10:16470881..16470905 (25 bp)
GTGAAACCACTGAACATTTACCTTT
LOC_Os10g31970
Os.50631.1.S1_at--174--191Chr10:16470896..16470920 (25 bp)
ATTTACCTTTGGACAGGCTCATGGT
LOC_Os10g31970
Os.50631.1.S1_at--656--8611Chr10:16470917..16470941 (25 bp)
TGGTGAACCTACTTCATGACCACTC
LOC_Os10g31970
Os.50631.1.S1_at--176--2831Chr10:16471213..16471237 (25 bp)
AAGTTGCTAGAAGTTGCCCCGAGGA
LOC_Os10g31970
Os.50631.1.S1_at--871--5551Chr10:16471236..16471260 (25 bp)
GAAAGCTACACATGACGCCGAGAGA
LOC_Os10g31970
Os.50631.1.S1_at--404--8811Chr10:16471272..16471296 (25 bp)
TGTTCCAACAGAGAGCAGCCTTATA
LOC_Os10g31970
Os.50631.1.S1_at--634--1471Chr10:16471285..16471309 (25 bp)
AGCAGCCTTATACAACCACCTAAAG
LOC_Os10g31970
Os.50631.1.S1_at--556--7431Chr10:16471368..16471392 (25 bp)
GTGTAACAACCTGAGCCACTTGCTT
LOC_Os10g31970
Os.50631.1.S1_at--97--8931Chr10:16471379..16471403 (25 bp)
TGAGCCACTTGCTTACTCTGAGAAG
LOC_Os10g31970
Os.50631.1.S1_at--222--1711Chr10:16471411..16471435 (25 bp)
ACCAAGCCTGGATGCAGCACGAGTT
LOC_Os10g31970
Target Sequence 
GTTGGGACTGAGAAGCCACCTACTCCCAACTCCAGTGAAACCACTGAACATTTACCTTTGGACAGGCTCATGGTGAACCT
ACTTCATGACCACTCCCGGTGGATCGCAAGTTACCATGAACATGAAACCCTTCTGCAAGAAAATGAAGAAGAAAGGCTTA
CCAAGGAGGAGCAAGATATGGCATGGTTAAGCTACAACAAGTTGCTAGAAGTTGCCCCGAGGAAAGCTACACATGACGCC
GAGAGAAAACCAAGTACTGTTCCAACAGAGAGCAGCCTTATACAACCACCTAAAGCTACTTCAAGAAGCCGGCAACCCCA
GCAGCCTAAGATCACTTCAAACAACCAAAAGAAGTGTAACAACCTGAGCCACTTGCTTACTCTGAGAAGCCAAGGCACCA
AGCCTGGATGCAGCACGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis