Browse Element(s) Details


OsAffx.6832.1.S1_at

Description tigr:9638.m02775
TID=OsAffx.6832.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3201011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6832.1.S1_at--701--4171Chr10:16490320..16490344 (25 bp)
CCCACGACACCCTGGGAGACAGGGA
LOC_Os10g32010
OsAffx.6832.1.S1_at--509--7651Chr10:16490341..16490365 (25 bp)
GGGAGATCGCCCTACTCAGCTGCAG
LOC_Os10g32010
OsAffx.6832.1.S1_at--926--4231Chr10:16490394..16490418 (25 bp)
CCGTGTTACGTGGTGGCTGCGCTCA
LOC_Os10g32010
OsAffx.6832.1.S1_at--774--10471Chr10:16490399..16490423 (25 bp)
TTACGTGGTGGCTGCGCTCAGGACC
LOC_Os10g32010
OsAffx.6832.1.S1_at--374--1851Chr10:16490518..16490542 (25 bp)
ACGAACCGCCGCCATTGATGAGGGA
LOC_Os10g32010
OsAffx.6832.1.S1_at--1107--1791Chr10:16490522..16490546 (25 bp)
ACCGCCGCCATTGATGAGGGACGTG
LOC_Os10g32010
OsAffx.6832.1.S1_at--764--6111Chr10:16490537..16490561 (25 bp)
GAGGGACGTGGTGTTCCCCATCCCG
LOC_Os10g32010
OsAffx.6832.1.S1_at--890--3951Chr10:16490560..16490584 (25 bp)
CGGAGACGTCGCACCGGCAAGTGCA
LOC_Os10g32010
OsAffx.6832.1.S1_at--224--9671Chr10:16490789..16490813 (25 bp)
TCAGCCGAGACAGGAGGTTCATCAG
LOC_Os10g32010
OsAffx.6832.1.S1_at--119--7691Chr10:16491190..16491214 (25 bp)
GGGTAAAATGGACCTTTCGCATGGT
LOC_Os10g32010
OsAffx.6832.1.S1_at--961--3671Chr10:16491203..16491227 (25 bp)
CTTTCGCATGGTCCGATGGCAAGAG
LOC_Os10g32010
Target Sequence 
CCCACGACACCCTGGGAGACAGGGAGATCGCCCTACTCAGCTGCAGCGGCGGCGATGGCGGCGGCGACGGCGAGCCGTGT
TACGTGGTGGCTGCGCTCAGGACCATCCCCGGCAGCACAACCATCCACAGGCTGCATCTCTACCGCTCCAGGCCGGGCGG
CGAGCAAGGGAGATGGACCTCGCGGATGGTGTCCGTGGACGAACCGCCGCCATTGATGAGGGACGTGGTGTTCCCCATCC
CGGAGACGTCGCACCGGCAAGTGCACCACGTGACGAGCAAGGCGATCAGGCTGGGATCGGGCGGAGACGGCACGGTAGGG
TGGGTGGACATCTGGCGCGGCATCCTCCTCTGCGACGTGCTCCACGAGAGCCCCAAGCTCCGCGACGTGCCGCTGCCGCC
GCCGGCGAAGGGGAACAGCCACAGGGCCTTCCAAAAACACCACCGACCAGTACTGCGCCGACATCGCCGTCAGCCGAGAC
AGGAGGTTCATCAGGGAGAGAGGAGGGGTAAAATGGACCTTTCGCATGGTCCGATGGCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis