Browse Element(s) Details


Os.46821.1.S1_at

Description gb:AK109739.1
DB_XREF= gi:32994948
TID=Os.46821.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0011A08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-D04, full insert sequence.
FL= gb:AK109739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g320209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46821.1.S1_at--520--9671NONE
TCAGCGCTCCAGGTACAAGAGAATC
NONE
Os.46821.1.S1_at--653--4731Chr10:16495432..16495456 (25 bp)
GCTGTCCAGCAGTGAGATGCCAATG
LOC_Os10g32020
Os.46821.1.S1_at--61--591Chr10:16495448..16495472 (25 bp)
ATGCCAATGGTAGAATATTATCGGC
LOC_Os10g32020
Os.46821.1.S1_at--615--3111Chr10:16495461..16495485 (25 bp)
AATATTATCGGCTTGAGTCTGTTGC
LOC_Os10g32020
Os.46821.1.S1_at--1014--351Chr10:16495496..16495520 (25 bp)
ATAATGGATTTGCTACTGCTATGTG
LOC_Os10g32020
Os.46821.1.S1_at--1025--3831Chr10:16495511..16495535 (25 bp)
CTGCTATGTGCAGTTCTGTAACAAA
LOC_Os10g32020
Os.46821.1.S1_at--1137--5411NONE
GAACCTTATCATCTTGGTACTTTTT
NONE
Os.46821.1.S1_at--982--10251Chr10:16495565..16495589 (25 bp)
TTTGTTCTTTTTCCCTTCTTGCAAG
LOC_Os10g32020
Os.46821.1.S1_at--995--2691Chr10:16495587..16495611 (25 bp)
AAGCTTCTTGGAGAAAACCTCTACA
LOC_Os10g32020
Os.46821.1.S1_at--214--5531Chr10:16495599..16495623 (25 bp)
GAAAACCTCTACAATAGCTTGGCTA
LOC_Os10g32020
Os.46821.1.S1_at--317--1551Chr10:16495614..16495638 (25 bp)
AGCTTGGCTATAAATTTCAGTTAAC
LOC_Os10g32020
Target Sequence 
TCAGCGCTCCAGGTACAAGAGAATCACTTGGACAAGCTGAAGATCATGGGCAGAAGTCAGCAAGAAGAAGAAGAAGAAGA
CGTGGAAAGCGGCAAGAGTGATGCTGTCCAGCAGTGAGATGCCAATGGTAGAATATTATCGGCTTGAGTCTGTTGCTTTC
ATATGGATAATGGATTTGCTACTGCTATGTGCAGTTCTGTAACAAATTCTAGAACCTTATCATCTTGGTACTTTTTTTGT
TCTTTTTCCCTTCTTGCAAGCTTCTTGGAGAAAACCTCTACAATAGCTTGGCTATAAATTTCAGTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis