Browse Element(s) Details


Os.46595.1.S1_a_at

Description gb:AK059744.1
DB_XREF= gi:32969762
TID=Os.46595.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative HAM-1-like protein (OSJNBa0018F16.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H06, full insert sequence.
FL= gb:AK059744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g319409/11Inosine triphosphate pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31880NANA10+16416050..16417447retrotransposon protein, putative, unclassified
LOC_Os10g31890NANA10+16418455..16419662retrotransposon protein, putative, unclassified
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46595.1.S1_a_at--696--5511Chr10:16440720..16440744 (25 bp)
GAACAATTTGTTGCTAGCCTATGAA
LOC_Os10g31940
Os.46595.1.S1_a_at--1061--1251Chr10:16440696..16440720 (25 bp)
AGATAAATCTGCTTTTGCTATGTGC
LOC_Os10g31940
Os.46595.1.S1_a_at--618--10311Chr10:16440667..16440691 (25 bp)
TTTCTCTTGCTCTTGGACCAGGAGA
LOC_Os10g31940
Os.46595.1.S1_a_at--385--5671NONE
GACATTCGTTGGGAAAACAGCAGGA
NONE
Os.46595.1.S1_a_at--605--5571Chr10:16440084..16440108 (25 bp)
GAAAGATTGTGCCTGCTAGAGGACC
LOC_Os10g31940
Os.46595.1.S1_a_at--367--3711Chr10:16440069..16440093 (25 bp)
CTAGAGGACCTGCTGATTTTGGATG
LOC_Os10g31940
Os.46595.1.S1_a_at--150--6811NONE
GTTTTGATCAAACCTACGCTGAGAT
NONE
Os.46595.1.S1_a_at--505--2371Chr10:16439938..16439958 (21 bp)
AAACCTACGCTGAGATGCCCAAGTC
LOC_Os10g31940
Os.46595.1.S1_a_at--527--6031Chr10:16439927..16439951 (25 bp)
GAGATGCCCAAGTCAGTGAAGAATC
LOC_Os10g31940
Os.46595.1.S1_a_at--286--1431Chr10:16439865..16439889 (25 bp)
AGAACACTTTGCAGCTGCCAACTAT
LOC_Os10g31940
Os.46595.1.S1_a_at--900--1211Chr10:16439838..16439862 (25 bp)
AGTTCAGAACGATGGTTCAGCTTGA
LOC_Os10g31940
Target Sequence 
GAACAATTTGTTGCTAGCCTATGAAGATAAATCTGCTTTTGCTATGTGCNTCTTTTCTCTTGCTCTTGGACCAGGAGAAG
AACCAATGACATTCGTTGGGAAAACAGCAGGAAAGATTGTGCCTGCTAGAGGACCTGCTGATTTTGGATGGGACCCNAGT
ATTCCAANCAGATGGTTTTGATCAAACCTACGCTGAGATGCCCAAGTCAGTGAAGAATCAAATATCTCACAGNGGAAAAN
NTCTTGCTNTGGTGAAAGAACACTTTGCAGCTGCCAACTATAAAGTTCAGAACGATGGTTCAGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46595.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis