Browse Element(s) Details


Os.5866.1.S1_at

Description gb:AK103490.1
DB_XREF= gi:32988699
TID=Os.5866.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative spliceosomal protein (OSJNBa0018F16.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130N07, full insert sequence.
FL= gb:AK103490.1 gb:AK060554.1 gb:AK061041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3190011/11Splicing factor 3B subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein
LOC_Os10g31880NANA10+16416050..16417447retrotransposon protein, putative, unclassified
LOC_Os10g31890NANA10+16418455..16419662retrotransposon protein, putative, unclassified
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000289biological_processpoly(A) tail shortening
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003730molecular_functionmRNA 3'-UTR binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008143molecular_functionpoly(A) binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5866.1.S1_at--66--9031Chr10:16425211..16425235 (25 bp)
TGCAAATGGTGCACCTGTGCCTCGA
LOC_Os10g31900
Os.5866.1.S1_at--96--8691Chr10:16425226..16425250 (25 bp)
TGTGCCTCGACCTTTTTCCAATGGG
LOC_Os10g31900
Os.5866.1.S1_at--958--1131Chr10:16425253..16425277 (25 bp)
AGTGCCACCTCAGATTCAACATGTT
LOC_Os10g31900
Os.5866.1.S1_at--836--3271Chr10:16425299..16425323 (25 bp)
CAACAATTCCCTCCAATGCAGATGA
LOC_Os10g31900
Os.5866.1.S1_at--359--5291Chr10:16425322..16425346 (25 bp)
GAATGGTCAGCCTGTTTGGCCTCCG
LOC_Os10g31900
Os.5866.1.S1_at--748--10871Chr10:16425337..16425361 (25 bp)
TTGGCCTCCGCAGAATACACAGCTA
LOC_Os10g31900
Os.5866.1.S1_at--1029--131Chr10:16425387..16425411 (25 bp)
ATTACAGGCCTGCAGTGAGACCACC
LOC_Os10g31900
Os.5866.1.S1_at--975--1192Chr10:16425473..16425497 (25 bp)
AGTATGCCAGCTCCACCTATGTGGA
LOC_Os10g31900
Os.5866.1.S1_at--565--611Chr10:16425588..16425612 (25 bp)
ATGCTGGTGAAGGTTCCATACCATA
LOC_Os10g31900
Os.5866.1.S1_at--151--311Chr10:16425605..16425629 (25 bp)
ATACCATATGGCACATTGTAGCTGT
LOC_Os10g31900
Os.5866.1.S1_at--769--4751Chr10:16425710..16425734 (25 bp)
GCTGACACTGATACAAATTCTCGAG
LOC_Os10g31900
Target Sequence 
TGCAAATGGTGCACCTGTGCCTCGACCTTTTTCCAATGGGGCAGTGCCACCTCAGATTCAACATGTTCGACCGCCGCCAC
CTCCTATGCAACAATTCCCTCCAATGCAGATGAATGGTCAGCCTGTTTGGCCTCCGCAGAATACACAGCTACCACCCCAC
ATGCCACCTCAAATGCATTACAGGCCTGCAGTGAGACCACCTCCACCAAACATGATGCCACCCCCTCCTCTTGGCATGGT
AAGGCCTCCGCCGCCTCCTTCCAGTATGCCAGCTCCACCTATGTGGAGGCCACCCCCACCCCCACAACAAGCTGGTGGTA
TGCCACCACCTCCTATGTCCATGCCACCGCCGCCACCACCACCTTCTGGTTAAACATATGCTGGTGAAGGTTCCATACCA
TATGGCACATTGTAGCTGTAGACTGAGAATGTTGGTACCTTTCTTATATTTCCATGTAACTTGCAAACACTAGGAGAGGA
TCAGAATTCAGTGAGTTTAGCTGACACTGATACAAATTCTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis