Browse Element(s) Details


Os.24870.1.S1_s_at

Description gb:AK070098.1
DB_XREF= gi:32980122
TID=Os.24870.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP-dependent Clp protease regulatory subunit CLPX (P0434C04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040F17, full insert sequence.
FL= gb:AK070098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6633011/11ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os10g318641/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24870.1.S1_s_at--578--7371Chr01:38848165..38848189 (25 bp)
GTGACGGTGCATTGGAGCAGTACAT
LOC_Os01g66330
Os.24870.1.S1_s_at--310--2731Chr01:38847924..38848148 (25 bp)
AAGAATTCCATGGAAGCTAACGAGG
LOC_Os01g66330
Os.24870.1.S1_s_at--736--8771Chr01:38847856..38847880 (25 bp)
TGTTAGCTTGTAATTAATTTGACCA
LOC_Os01g66330
Os.24870.1.S1_s_at--610--211Chr01:38847840..38847864 (25 bp)
ATTTGACCAACTTCATTCAACATGT
LOC_Os01g66330
Os.24870.1.S1_s_at--496--1631Chr01:38847787..38847811 (25 bp)
AGCCGCTTGTTCTCTTACCATTTTT
LOC_Os01g66330
Os.24870.1.S1_s_at--9--192Chr10:16388289..16388317 (25 bp)
ATTTATTTTTGCTTGTTTTCTGACA
LOC_Os10g31864
Os.24870.1.S1_s_at--823--7151Chr01:38847725..38847749 (25 bp)
GTCTATAGCTCAATTTGTTGTAATT
LOC_Os01g66330
Os.24870.1.S1_s_at--255--10511Chr01:38847702..38847726 (25 bp)
TTCATGTAAACAGGAGTTGCTTTTC
LOC_Os01g66330
Os.24870.1.S1_s_at--764--9051Chr01:38847685..38847709 (25 bp)
TGCTTTTCATTGAGCAACCCTCCTG
LOC_Os01g66330
Os.24870.1.S1_s_at--49--8911Chr01:38847675..38847699 (25 bp)
TGAGCAACCCTCCTGCAAAGTAAAT
LOC_Os01g66330
Os.24870.1.S1_s_at--3--9031Chr01:38847662..38847686 (25 bp)
TGCAAAGTAAATTTGCCCCTTCTTT
LOC_Os01g66330
Target Sequence 
GTGACGGTGCATTGGAGCAGTACATAACAAACACTAACATGAAGAATTCCATGGAAGCTAACGAGGGTTTGGCGGGTGAA
CTTGAAGATGCATATATGATGTCAAGATTTGTTAGCTTGTAATTAATTTGACCAACTTCATTCAACATGTAACATGGTCT
CCCCCTCACTCACATNACAGCCGCTTGTTCTCTTACCATTTTTTTCTGTAATTTATTTTTGCTTGTTTTCTGACAAGCAA
GTCTATAGCTCAATTTGTTGTAATTCATGTAAACAGGAGTTGCTTTTCATTGAGCAACCCTCCTGCAAAGTAAATTTGCC
CCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24870.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis