Browse Element(s) Details


Os.6029.1.S1_at

Description gb:AU030566
DB_XREF= gi:3763814
DB_XREF=AU030566
CLONE=E51250_2Z
TID=Os.6029.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434C04.16 (P0434C04.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6637911/11peptide chain release factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66400NANA1+38885986..38886518hypothetical protein
LOC_Os01g66410OsAffx.21808.1.S1_at7/111+38887410..38888773hypothetical protein
LOC_Os01g66410OsAffx.26951.1.S1_at1/111+38887410..38888773hypothetical protein
LOC_Os01g66420Os.2294.1.S1_at11/111+38892997..38897710PHD finger protein, putative, expressed
LOC_Os01g66430OsAffx.23938.1.S1_at11/111+38897920..38898425hypothetical protein
LOC_Os01g66440OsAffx.23939.1.S1_at11/111+38900964..38906956hypothetical protein
LOC_Os01g66440OsAffx.23939.2.S1_s_at10/111+38900964..38906956hypothetical protein
LOC_Os01g66450OsAffx.20565.1.S1_at1/111+38909256..38912166retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6029.1.S1_at--798--2511Chr01:38873630..38873784 (25 bp)
AACTTTTGGGCCTAAGCACTGGTGC
LOC_Os01g66379
Os.6029.1.S1_at--185--411Chr01:38873587..38873611 (25 bp)
ATCAGATGATTCACTTCGAGCAGCT
LOC_Os01g66379
Os.6029.1.S1_at--160--671Chr01:38873562..38873582 (21 bp)
ATGAACTGCGAGCTGCCAAGGGTCT
LOC_Os01g66379
Os.6029.1.S1_at--759--4391Chr01:38873052..38873072 (21 bp)
GCCAAGGGTCTGAAGCCACTTAGAT
LOC_Os01g66379
Os.6029.1.S1_at--509--7931Chr01:38873021..38873045 (25 bp)
GGATTGCCTGCATAATGTTCTCATC
LOC_Os01g66379
Os.6029.1.S1_at--338--9691Chr01:38872922..38872946 (25 bp)
TCACGATTTCCCTTTCGTGCAAGGA
LOC_Os01g66379
Os.6029.1.S1_at--934--1571Chr01:38872861..38872885 (25 bp)
AGCTCTGGATGTTACAAGACCCTAT
LOC_Os01g66379
Os.6029.1.S1_at--897--2751Chr01:38872846..38872870 (25 bp)
AAGACCCTATCTATGGCTTCATTCT
LOC_Os01g66379
Os.6029.1.S1_at--1037--271Chr01:38872814..38872838 (25 bp)
ATAGGCCTTATCATTCACAACTCAA
LOC_Os01g66379
Os.6029.1.S1_at--753--1311Chr01:38872774..38872798 (25 bp)
AGATGGATCTGCCTAACATGTCACC
LOC_Os01g66379
Os.6029.1.S1_at--243--751Chr01:38872698..38872722 (25 bp)
ATGTATTGCCATTGCTTGATGCTGT
LOC_Os01g66379
Target Sequence 
AACTTTTGGGCCTAAGCACTGGTGCTNGTGTCAAGGTTGATTCTATCAGATGATTCACTTCGAGCAGCTGCAAATGAACT
GCGAGCTGCCAAGGGTCTGAAGCCACTTAGATGATAGAGGATTGCCTGCATAATGTTCTCATCATCAATGGCGCCGCCGC
AGGTTCCCAAATGGCATATCATATAATATAACTCATGAAGGCANTNTTGGGTGTTTGTCACGATTTCCCTTTCGTGCAAG
GAAAAATACTCAGGATTGTCTTAGGTGGGACCGGTACCAGCTCTGGATGTTACAAGACCCTATCTATGGCTTCATTCTGT
TATACATAGGCCTTATCATTCACAACTCAAGAACCATCCTTTTTCAGATGGATCTGCCTAACATGTCACCCTAAGGATGA
ATTCAGTTGTAATTAGCACATGAACCTACATTGTAATTTCCATGTATTGCCATTGCTTGATGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis