Browse Element(s) Details


Os.2294.1.S1_at

Description gb:AF045571.1
DB_XREF= gi:4091079
TID=Os.2294.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2294 (NCBI UniGene Cluster)
DEF=Oryza sativa nucleic acid binding protein mRNA, complete cds.
PROD=nucleic acid binding protein
FL= gb:AF045571.1 gb:AK058498.1 gb:AK058384.1 gb:AF047428.1 gb:AK071139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6642011/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66400NANA1+38885986..38886518hypothetical protein
LOC_Os01g66410OsAffx.21808.1.S1_at7/111+38887410..38888773hypothetical protein
LOC_Os01g66410OsAffx.26951.1.S1_at1/111+38887410..38888773hypothetical protein
LOC_Os01g66420Os.2294.1.S1_at11/111+38892997..38897710PHD finger protein, putative, expressed
LOC_Os01g66430OsAffx.23938.1.S1_at11/111+38897920..38898425hypothetical protein
LOC_Os01g66440OsAffx.23939.1.S1_at11/111+38900964..38906956hypothetical protein
LOC_Os01g66440OsAffx.23939.2.S1_s_at10/111+38900964..38906956hypothetical protein
LOC_Os01g66450OsAffx.20565.1.S1_at1/111+38909256..38912166retrotransposon protein, putative, unclassified
LOC_Os01g66460NANA1+38912496..38915589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66470NANA1+38915776..38918601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66480NANA1+38921299..38921592hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2294.1.S1_at--1134--2651Chr01:38893520..38893615 (25 bp)
AAGCCTAGTTCGAAAGTGCAGTCAA
LOC_Os01g66420
Os.2294.1.S1_at--599--7331Chr01:38893505..38893527 (23 bp)
GTGCAGTCAAAAGCTGAGTCTCGTT
LOC_Os01g66420
Os.2294.1.S1_at--242--7171Chr01:38893488..38893512 (25 bp)
GTCTCGTTCGAAATCTAAGCTGTCA
LOC_Os01g66420
Os.2294.1.S1_at--633--6171Chr01:38893415..38893439 (25 bp)
GAGGATGACCATGACAACACTTTGT
LOC_Os01g66420
Os.2294.1.S1_at--920--7451Chr01:38893392..38893416 (25 bp)
GTGTGGGACCTGTGGAACCAACGAT
LOC_Os01g66420
Os.2294.1.S1_at--960--6711Chr01:38893356..38893380 (25 bp)
GTTCTGGATCTGTTGCGATAACTGC
LOC_Os01g66420
Os.2294.1.S1_at--1123--7071Chr01:38893187..38893211 (25 bp)
GTCAATCTCCGGATGTCATGATCTC
LOC_Os01g66420
Os.2294.1.S1_at--953--1251Chr01:38893160..38893184 (25 bp)
AGATATTATCTTGCCCTAGCTTTTC
LOC_Os01g66420
Os.2294.1.S1_at--222--7051Chr01:38893099..38893123 (25 bp)
GTAACTGTTGATTAACCTACCTGTG
LOC_Os01g66420
Os.2294.1.S1_at--41--3731Chr01:38893083..38893107 (25 bp)
CTACCTGTGTTTAAAGCTTCATCTT
LOC_Os01g66420
Os.2294.1.S1_at--373--431Chr01:38893063..38893087 (25 bp)
ATCTTTCCTGTGTTAATTCTAGCAT
LOC_Os01g66420
Target Sequence 
AAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAGAGGGAAG
TGGTGATGATGAGGGAGAGGAAGAGGAGGATGACCATGACAACACTTTGTGTGGGACCTGTGGAACCAACGATGGCAAGG
ACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACCCGCTCGTGCCGAG
CATATCAAGCAGTACAAGTGCCCGGACTGCACCAACAAGAGGNCCCGGGCATGAGTAACAAGAAGNTGTGTCGAACTGTG
TTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTG
TCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis