Browse Element(s) Details


OsAffx.21808.1.S1_at

Description gb:NM_190194.1
DB_XREF= gi:34907471
GEN=P0434C04.20
TID=OsAffx.21808.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434C04.20 (P0434C04.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g664107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66400NANA1+38885986..38886518hypothetical protein
LOC_Os01g66410OsAffx.21808.1.S1_at7/111+38887410..38888773hypothetical protein
LOC_Os01g66410OsAffx.26951.1.S1_at1/111+38887410..38888773hypothetical protein
LOC_Os01g66420Os.2294.1.S1_at11/111+38892997..38897710PHD finger protein, putative, expressed
LOC_Os01g66430OsAffx.23938.1.S1_at11/111+38897920..38898425hypothetical protein
LOC_Os01g66440OsAffx.23939.1.S1_at11/111+38900964..38906956hypothetical protein
LOC_Os01g66440OsAffx.23939.2.S1_s_at10/111+38900964..38906956hypothetical protein
LOC_Os01g66450OsAffx.20565.1.S1_at1/111+38909256..38912166retrotransposon protein, putative, unclassified
LOC_Os01g66460NANA1+38912496..38915589retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21808.1.S1_at--524--10711Chr01:38889953..38889976 (24 bp)
TTGCTGGAGGTAGCGATTGATCGAC
NONE
OsAffx.21808.1.S1_at--482--6391Chr01:38889647..38889958 (25 bp)
GATCGACATTGTACCAACTCCATTG
NONE
OsAffx.21808.1.S1_at--515--6971Chr01:38889637..38889661 (25 bp)
GTACCAACTCCATTGCATATAAGAA
NONE
OsAffx.21808.1.S1_at--451--8971Chr01:38888534..38888558 (25 bp)
TGAAAATCTTACCTTCACTTAGTAA
LOC_Os01g66410
OsAffx.21808.1.S1_at--682--2151Chr01:38888475..38888499 (25 bp)
ACACCAATAACCTTCATTTACTATG
LOC_Os01g66410
OsAffx.21808.1.S1_at--931--2471NONE
AACACCAATGTGACGTACTCAGACA
NONE
OsAffx.21808.1.S1_at--98--8951Chr01:38887591..38887614 (24 bp)
TGACGTACTCAGACATTATGCAACA
LOC_Os01g66410
OsAffx.21808.1.S1_at--4--2471Chr01:38887570..38887594 (25 bp)
AACAAGAGCAGTTTGCGGTCGCTGA
LOC_Os01g66410
OsAffx.21808.1.S1_at--1111--4671Chr01:38887556..38887580 (25 bp)
GCGGTCGCTGAAATTAGCAGGATAA
LOC_Os01g66410
OsAffx.21808.1.S1_at--1157--1091Chr01:38887532..38887556 (25 bp)
AGTGATACAAAGACTCTGATGGAGC
LOC_Os01g66410
OsAffx.21808.1.S1_at--1122--6231Chr01:38887515..38887539 (25 bp)
GATGGAGCAAAACTTGTGCAATCTA
LOC_Os01g66410
Target Sequence 
TTGCTGGAGGTAGCGATTGATCGACATTGTACCAACTCCATTGCATATAAGAAANNNTNNGNGANNTTNNNNNNGNNNGN
ANNNNGTTNNNTNANNNTGGNTGNNNTNGNNNTTNNNNNNTNNNNNNNGAAATATCCAAAGAGGGGGAAGGCAACAACAC
CAACACCAATATTGAAAATCTTACCTTCACTTAGTAACAAATATCCAAAGAGGAGGAAGATAACAACACCAACACCAATA
ACCTTCATTTACTATGAAATATCTAAAGAGGGGAAAGATAACAACACCAACACCAATGTGACGTACTCAGACATTATGCA
ACAAGAGCAGTTTGCGGTCGCTGAAATTAGCAGGATAAGTGATACAAAGACTCTGATGGAGCAAAACTTGTGCAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis