Browse Element(s) Details


OsAffx.23938.1.S1_at

Description tigr:9629.m06588
TID=OsAffx.23938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6643011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66400NANA1+38885986..38886518hypothetical protein
LOC_Os01g66410OsAffx.21808.1.S1_at7/111+38887410..38888773hypothetical protein
LOC_Os01g66410OsAffx.26951.1.S1_at1/111+38887410..38888773hypothetical protein
LOC_Os01g66420Os.2294.1.S1_at11/111+38892997..38897710PHD finger protein, putative, expressed
LOC_Os01g66430OsAffx.23938.1.S1_at11/111+38897920..38898425hypothetical protein
LOC_Os01g66440OsAffx.23939.1.S1_at11/111+38900964..38906956hypothetical protein
LOC_Os01g66440OsAffx.23939.2.S1_s_at10/111+38900964..38906956hypothetical protein
LOC_Os01g66450OsAffx.20565.1.S1_at1/111+38909256..38912166retrotransposon protein, putative, unclassified
LOC_Os01g66460NANA1+38912496..38915589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66470NANA1+38915776..38918601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66480NANA1+38921299..38921592hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23938.1.S1_at--954--2991Chr01:38898360..38898384 (25 bp)
AATGAGTGGCCTGGCCAGTGGCCAC
LOC_Os01g66430
OsAffx.23938.1.S1_at--279--3471Chr01:38898345..38898369 (25 bp)
CAGTGGCCACTGGATGTGCTTGCAT
LOC_Os01g66430
OsAffx.23938.1.S1_at--874--8551Chr01:38898335..38898359 (25 bp)
TGGATGTGCTTGCATGTCCCTTTCA
LOC_Os01g66430
OsAffx.23938.1.S1_at--741--771Chr01:38898322..38898346 (25 bp)
ATGTCCCTTTCACGGTTGGTGCATC
LOC_Os01g66430
OsAffx.23938.1.S1_at--972--9651Chr01:38898313..38898337 (25 bp)
TCACGGTTGGTGCATCGGTTCCTTT
LOC_Os01g66430
OsAffx.23938.1.S1_at--48--8611Chr01:38898306..38898330 (25 bp)
TGGTGCATCGGTTCCTTTCGCGCCA
LOC_Os01g66430
OsAffx.23938.1.S1_at--559--3311Chr01:38898283..38898307 (25 bp)
CACTCATCAAACCAACCTGTGTCGA
LOC_Os01g66430
OsAffx.23938.1.S1_at--241--2371Chr01:38898275..38898299 (25 bp)
AAACCAACCTGTGTCGAGATTGCGA
LOC_Os01g66430
OsAffx.23938.1.S1_at--235--6051Chr01:38898260..38898284 (25 bp)
GAGATTGCGACAGGTGCATTTGCAC
LOC_Os01g66430
OsAffx.23938.1.S1_at--717--7771Chr01:38898248..38898272 (25 bp)
GGTGCATTTGCACCTGAGAGGCAAA
LOC_Os01g66430
OsAffx.23938.1.S1_at--1091--5071Chr01:38898239..38898263 (25 bp)
GCACCTGAGAGGCAAACAATTTGCA
LOC_Os01g66430
Target Sequence 
AATGAGTGGCCTGGCCAGTGGCCACTGGATGTGCTTGCATGTCCCTTTCACGGTTGGTGCATCGGTTCCTTTCGCGCCAC
TCATCAAACCAACCTGTGTCGAGATTGCGACAGGTGCATTTGCACCTGAGAGGCAAACAATTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis