Browse Element(s) Details


OsAffx.23939.1.S1_at

Description gb:NM_190196.1
DB_XREF= gi:34907475
GEN=P0434C04.22
TID=OsAffx.23939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434C04.22 (P0434C04.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6644011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66400NANA1+38885986..38886518hypothetical protein
LOC_Os01g66410OsAffx.21808.1.S1_at7/111+38887410..38888773hypothetical protein
LOC_Os01g66410OsAffx.26951.1.S1_at1/111+38887410..38888773hypothetical protein
LOC_Os01g66420Os.2294.1.S1_at11/111+38892997..38897710PHD finger protein, putative, expressed
LOC_Os01g66430OsAffx.23938.1.S1_at11/111+38897920..38898425hypothetical protein
LOC_Os01g66440OsAffx.23939.1.S1_at11/111+38900964..38906956hypothetical protein
LOC_Os01g66440OsAffx.23939.2.S1_s_at10/111+38900964..38906956hypothetical protein
LOC_Os01g66450OsAffx.20565.1.S1_at1/111+38909256..38912166retrotransposon protein, putative, unclassified
LOC_Os01g66460NANA1+38912496..38915589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66470NANA1+38915776..38918601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66480NANA1+38921299..38921592hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23939.1.S1_at--358--8131Chr01:38906368..38906388 (21 bp)
GGACTAGCCATCGATCTAGCGACAT
LOC_Os01g66440
OsAffx.23939.1.S1_at--852--5491Chr01:38906390..38906414 (25 bp)
GAACAGCTGCGATTGGTCCGTACTG
LOC_Os01g66440
OsAffx.23939.1.S1_at--43--5011Chr01:38906414..38906438 (25 bp)
GCATGGTACCGCAGGCCCAGATTGA
LOC_Os01g66440
OsAffx.23939.1.S1_at--656--9811Chr01:38906461..38906485 (25 bp)
TAAACTAGTACTTTCACGTCCGAGC
LOC_Os01g66440
OsAffx.23939.1.S1_at--15--1591Chr01:38906483..38906507 (25 bp)
AGCTCATCCGTTAGCGGTGCTTTGA
LOC_Os01g66440
OsAffx.23939.1.S1_at--866--3671Chr01:38906502..38906526 (25 bp)
CTTTGACTTGCAGCCCTTTGGGAAG
LOC_Os01g66440
OsAffx.23939.1.S1_at--39--4852Chr01:38906531..38906555 (25 bp)
GCTAAAATCCAATGCGAGCTCGCCA
LOC_Os01g66440
OsAffx.23939.1.S1_at--794--5891Chr01:38906546..38906570 (25 bp)
GAGCTCGCCAGAGTTTTCGTTCGCT
LOC_Os01g66440
OsAffx.23939.1.S1_at--45--7392Chr01:38906582..38906606 (25 bp)
GTGAGCATCGTGGACCCAAATCCAT
LOC_Os01g66440
OsAffx.23939.1.S1_at--175--411Chr01:38906621..38906645 (25 bp)
ATCAGTGTCGTCTGCTGCTATGCTG
LOC_Os01g66440
OsAffx.23939.1.S1_at--803--3591Chr01:38906646..38906670 (25 bp)
CATTGTTGACTGTCGCCGTTAGGGA
LOC_Os01g66440
Target Sequence 
GGACTAGCCATCGATCTAGCGACATCGAACAGCTGCGATTGGTCCGTACTGCATGGTACCGCAGGCCCAGATTGAGGAGG
TACCGTGAGTGGAAGGGTAAACTAGTACTTTCACGTCCGAGCTCATCCGTTAGCGGTGCTTTGACTTGCAGCCCTTTGGG
AAGAAGGGCTAAAATCCAATGCGAGCTCGCCAGAGTTTTCGTTCGCTGGCCGCGACTGGTGAGCATCGTGGACCCAAATC
CATTGCCGCCAGGCAGCATCAGTGTCGTCTGCTGCTATGCTGCATTGTTGACTGTCGCCGTTAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis