Browse Element(s) Details


OsAffx.21814.1.A1_at

Description tigr:9629.m06577
TID=OsAffx.21814.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g663209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21814.1.A1_at--60--1851Chr01:38847088..38847112 (25 bp)
ACGCTTTGCAGTGAGTCGCTGGAGA
NONE
OsAffx.21814.1.A1_at--62--5231Chr01:38847065..38847089 (25 bp)
GAATAATCTCGGAAGGGTCTCCCTC
NONE
OsAffx.21814.1.A1_at--357--9651Chr01:38847001..38847025 (25 bp)
TCAGCTCCGGGAAGCGCTTGCGGTT
LOC_Os01g66320
OsAffx.21814.1.A1_at--944--2671Chr01:38846878..38846902 (25 bp)
AAGCTGGGCCCCTCGTTCGGCATCG
LOC_Os01g66320
OsAffx.21814.1.A1_at--624--8311Chr01:38845407..38845431 (25 bp)
GGCTGGATTCCCTGGTTTGCAGTTG
LOC_Os01g66320
OsAffx.21814.1.A1_at--910--5451Chr01:38845305..38845329 (25 bp)
GAACGGGAGATATTCAAACATCAGG
LOC_Os01g66320
OsAffx.21814.1.A1_at--420--2091Chr01:38845288..38845312 (25 bp)
ACATCAGGAGATCATTTCAGAATTC
LOC_Os01g66320
OsAffx.21814.1.A1_at--594--5192Chr02:18022146..18022611 (25 bp)
GAATTCCAGAAACCTTCCTTACGAT
NONE
OsAffx.21814.1.A1_at--569--5551Chr01:38844989..38845285 (25 bp)
GAAACCTTCCTTACGATGAACAGTT
LOC_Os01g66320
OsAffx.21814.1.A1_at--834--6311Chr01:38844975..38844997 (23 bp)
GATGAACAGTTTGATATCCTATTTG
LOC_Os01g66320
OsAffx.21814.1.A1_at--193--6511Chr01:38844963..38844987 (25 bp)
GATATCCTATTTGACGAGATGATGG
LOC_Os01g66320
Target Sequence 
ACGCTTTGCAGTGAGTCGCTGGAGAATAATCTCGGAAGGGTCTCCCTCCCTCCCACCTCCTCATCCTCCTCCCCTCCTCC
GGTGAGCTCAGCTCCGGGAAGCGCTTGCGGTTGCGCGGGAAGCGCGCGGGCGAGGGAGGCCATGGCGTTCGGCGGCAGGA
GGGGCTCGTCGCGGTGGGGCCTCCCGGTGGTGAGGTCGGAGGCGCTCGGCAAGCTGGGCCCCTCGTTCGGCATCGGCGCC
GGCTGCGGCGTCGGCGTCTGCTTCGGCCTCATCGGCGGTGCAGGAATTGGGGCTGGATTCCCTGGTTTGCAGTTGGGATT
GGGAGCTGGTGCTGGATGTGGGATAGGAATAGGTTTTGGCTATGGTTTTGGAAAAGGAATTGCATATGATGAGAACGGGA
GATATTCAAACATCAGGAGATCATTTCAGAATTCCAGAAACCTTCCTTACGATGAACAGTTTGATATCCTATTTGACGAG
ATGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21814.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis