Browse Element(s) Details


Os.28114.1.S1_at

Description gb:AK065093.1
DB_XREF= gi:32975111
TID=Os.28114.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.28114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434C04.5 (P0434C04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001M07, full insert sequence.
FL= gb:AK065093.1 gb:AK104828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6630011/11KH domain-containing quaking protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28114.1.S1_at--329--5531Chr01:38839826..38839850 (25 bp)
GAAAACAGGGCGGTGATCTCGGTTC
LOC_Os01g66300
Os.28114.1.S1_at--965--7811Chr01:38839877..38839901 (25 bp)
GGTCATGGTTTCTATGTCTGATCAC
LOC_Os01g66300
Os.28114.1.S1_at--236--391Chr01:38839897..38839921 (25 bp)
ATCACATGCTGCTGTGCTTTGCTGG
LOC_Os01g66300
Os.28114.1.S1_at--1054--591Chr01:38839968..38839992 (25 bp)
ATGCCTGTCATGATCTGCCTTGTTT
LOC_Os01g66300
Os.28114.1.S1_at--697--9491Chr01:38839981..38840005 (25 bp)
TCTGCCTTGTTTTATCATCCTTGGG
LOC_Os01g66300
Os.28114.1.S1_at--593--5271Chr01:38840009..38840033 (25 bp)
GAATGATCCTCTCTGTGGGCTTGAT
LOC_Os01g66300
Os.28114.1.S1_at--22--10231Chr01:38840053..38840077 (25 bp)
TATTCTTTGTGCATCTGACTTCTGA
LOC_Os01g66300
Os.28114.1.S1_at--795--4531Chr01:38840115..38840139 (25 bp)
GCCCGGTTTGGCCAATCTAGAAAGA
LOC_Os01g66300
Os.28114.1.S1_at--435--31Chr01:38840140..38840164 (25 bp)
ATTGGGATCCCAAGTGTCGGACAAT
LOC_Os01g66300
Os.28114.1.S1_at--372--9091Chr01:38840222..38840246 (25 bp)
TGCTCTTGTGTGCTAGTGCTTAGTA
LOC_Os01g66300
Os.28114.1.S1_at--11--5371Chr01:38840279..38840303 (25 bp)
GAAGAGACAACCCTCCATTAATGAT
LOC_Os01g66300
Target Sequence 
GAAAACAGGGCGGTGATCTCGGTTCCGAAAGCATTATTATTCTCCAAATCTGGTCATGGTTTCTATGTCTGATCACATGC
TGCTGTGCTTTGCTGGAGATGATTGGTGATGCATATGCTGGGATCATCAGTGCTGCTGGCCTATGCCTGTCATGATCTGC
CTTGTTTTATCATCCTTGGGGGTGAATGATCCTCTCTGTGGGCTTGATGTTTGACGGTATTATTATTTATTCTTTGTGCA
TCTGACTTCTGAATATTAACATTATTGGTTTGGGTAAGTTAACAACAAGGCCCGGTTTGGCCAATCTAGAAAGAATTGGG
ATCCCAAGTGTCGGACAATAATCAGGTTTTGTCGGNGTACCTGAAAGAAATAGTAGTAATTTGTCAAAGGGGCTGGTGCT
CTTGTGTGCTAGTGCTTAGTACAAGACAGCCAAGCAATGAAGCAAGTATAGCTGAAGAGACAACCCTCCATTAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis