Browse Element(s) Details


OsAffx.11755.1.S1_at

Description tigr:9629.m06571
TID=OsAffx.11755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6626011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11755.1.S1_at--535--4491Chr01:38811874..38811898 (25 bp)
GCCGTGAACGGCAGGTTCTACTTCG
LOC_Os01g66260
OsAffx.11755.1.S1_at--814--2571Chr01:38811868..38811892 (25 bp)
AACGGCAGGTTCTACTTCGCGGACA
LOC_Os01g66260
OsAffx.11755.1.S1_at--1137--9871Chr01:38811856..38811880 (25 bp)
TACTTCGCGGACACCGGCAAGCTTG
LOC_Os01g66260
OsAffx.11755.1.S1_at--920--8211Chr01:38811841..38811865 (25 bp)
GGCAAGCTTGGCGTCCTCGAGTTCA
LOC_Os01g66260
OsAffx.11755.1.S1_at--3--1231Chr01:38811822..38811846 (25 bp)
AGTTCACCCCATCGCCGGAGTTCAG
LOC_Os01g66260
OsAffx.11755.1.S1_at--1148--2511Chr01:38811757..38811781 (25 bp)
AACTTCGCCAAGTCATTCCTGGTGG
LOC_Os01g66260
OsAffx.11755.1.S1_at--384--2831Chr01:38811748..38811772 (25 bp)
AAGTCATTCCTGGTGGCGTCCCACG
LOC_Os01g66260
OsAffx.11755.1.S1_at--803--71Chr01:38811743..38811767 (25 bp)
ATTCCTGGTGGCGTCCCACGGCGAG
LOC_Os01g66260
OsAffx.11755.1.S1_at--509--3271Chr01:38811500..38811524 (25 bp)
CAACATATTGGAGGAGCCGGACGGT
LOC_Os01g66260
OsAffx.11755.1.S1_at--406--1871Chr01:38811459..38811483 (25 bp)
ACGACCTCGGCGACGGAAGCATGGA
LOC_Os01g66260
OsAffx.11755.1.S1_at--354--4011Chr01:38811423..38811447 (25 bp)
CGTGCCCTGGTGTCTCGGAGCTCAT
LOC_Os01g66260
Target Sequence 
GCCGTGAACGGCAGGTTCTACTTCGCGGACACCGGCAAGCTTGGCGTCCTCGAGTTCACCCCATCGCCGGAGTTCAGCTA
CCTCGACTACCCGCACATCGAGTTCCCCGAGGGGTCCAACTTCGCCAAGTCATTCCTGGTGGCGTCCCACGGCGAGCTGT
TCGACGTGTACGTCTTCTTCAAGGGGTTCACGCCGGAGATCCTCGCCGTGCGCGTGTGCGCCATCGACCTCGGCGGCGCC
GGCGACGAGCGGCCGGCGTTCCGCGAGGTGGGCGACCTCGGCGACCGCGCGCTCCTCCTCGGCGACGCCAACGCGGCGCT
CTTGTGCTCGGCGAGCGCGCACGGGGTGAAGGGCAACCGCGTCTACTTCATGCACAACATATTGGAGGAGCCGGACGGTG
GGCCGCTGCGCGTCTACGACCTCGGCGACGGAAGCATGGAGACCGTGCGGCCGTGCCCTGGTGTCTCGGAGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis