Browse Element(s) Details


Os.10888.1.S1_at

Description gb:AK102068.1
DB_XREF= gi:32987277
TID=Os.10888.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082G03, full insert sequence.
FL= gb:AK067070.1 gb:AK062009.1 gb:AK102068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6620011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10888.1.S1_at--525--7631Chr01:38782044..38782068 (25 bp)
GGGAGACTTTCATTCAACCTACTCT
LOC_Os01g66200
Os.10888.1.S1_at--745--9351Chr01:38781991..38782015 (25 bp)
TCGCACCGCTACACGAATCTTAAAG
LOC_Os01g66200
Os.10888.1.S1_at--1058--9831Chr01:38781971..38781995 (25 bp)
TAAAGCATCGGCATTGCTGTCCACT
LOC_Os01g66200
Os.10888.1.S1_at--1018--7231Chr01:38781953..38781977 (25 bp)
GTCCACTTCCCCTGAATGATGTTTG
LOC_Os01g66200
Os.10888.1.S1_at--600--8771Chr01:38781921..38781945 (25 bp)
TGTATATCAGTTCCTCTACTCTCTA
LOC_Os01g66200
Os.10888.1.S1_at--1155--3631Chr01:38781885..38781909 (25 bp)
CTTCCCTTCAGAGCAAGTCCAATAT
LOC_Os01g66200
Os.10888.1.S1_at--301--251Chr01:38781838..38781862 (25 bp)
ATATCATCAACTGCCTAGCTTTGTC
LOC_Os01g66200
Os.10888.1.S1_at--1043--1551Chr01:38781822..38781846 (25 bp)
AGCTTTGTCGCCCAAGGAACTTAGA
LOC_Os01g66200
Os.10888.1.S1_at--1025--5491Chr01:38781799..38781823 (25 bp)
GAACAGTGCTGTACATACCTCAAAT
LOC_Os01g66200
Os.10888.1.S1_at--145--9611Chr01:38781753..38781777 (25 bp)
TAAGGCTACCCTGAACATGTGAAAA
LOC_Os01g66200
Os.10888.1.S1_at--427--7811Chr01:38781722..38781746 (25 bp)
GGTCTCTGAACATTGTCTGCACATC
LOC_Os01g66200
Target Sequence 
GGGAGACTTTCATTCAACCTACTCTCCCGCACAAATGATGGATCTGCGACAAGTCGCACCGCTACACGAATCTTAAAGCA
TCGGCATTGCTGTCCACTTCCCCTGAATGATGTTTGATGTTTCTGTATATCAGTTCCTCTACTCTCTAGTGCCTCCCCCC
TTCCCTTCAGAGCAAGTCCAATATAGTGTATGTAGTTACCTGTATCATATCATCAACTGCCTAGCTTTGTCGCCCAAGGA
ACTTAGAACAGTGCTGTACATACCTCAAATAAAATGTTTCGTCAGCTAAAGTAAGGCTACCCTGAACATGTGAAAAATCT
GTGGTCTCTGAACATTGTCTGCACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis