Browse Element(s) Details


Os.16257.1.S1_at

Description gb:AK100276.1
DB_XREF= gi:32985485
TID=Os.16257.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073G17, full insert sequence.
FL= gb:AK100276.1 gb:AK059113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6619011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16257.1.S1_at--209--4731Chr01:38775559..38775583 (25 bp)
GCTGGTGTACTATCCTGTAGCAGAT
LOC_Os01g66190
Os.16257.1.S1_at--1074--6951Chr01:38775543..38775567 (25 bp)
GTAGCAGATTCATTGGCTCTCCGAG
LOC_Os01g66190
Os.16257.1.S1_at--355--671Chr01:38775467..38775491 (25 bp)
ATGAAGGTGCATCGCTTGTAGCCAA
LOC_Os01g66190
Os.16257.1.S1_at--440--1851Chr01:38775402..38775426 (25 bp)
ACGAAGCGTGGTTCCATATCTTTCC
LOC_Os01g66190
Os.16257.1.S1_at--134--251Chr01:38775387..38775411 (25 bp)
ATATCTTTCCGCACTATGATCAGGG
LOC_Os01g66190
Os.16257.1.S1_at--189--5611Chr01:38775333..38775357 (25 bp)
GAAATTGGATTCTCCTCTCGTAGTG
LOC_Os01g66190
Os.16257.1.S1_at--487--1011Chr01:38775280..38775304 (25 bp)
AGGTTCATCCCCAAGTGCTGCAATG
LOC_Os01g66190
Os.16257.1.S1_at--49--631Chr01:38775252..38775276 (25 bp)
ATGCTCCCTCTCAAGGAAGTACCTA
LOC_Os01g66190
Os.16257.1.S1_at--606--1451Chr01:38775220..38775244 (25 bp)
AGAAGTATTCACCTGTTCCTTTTGC
LOC_Os01g66190
Os.16257.1.S1_at--98--10331Chr01:38775162..38775186 (25 bp)
TTTCTTCCTCTTACTACCTTAATGA
LOC_Os01g66190
Os.16257.1.S1_at--911--4731Chr01:38775022..38775046 (25 bp)
GCTGAGGAGCTGTGCATCTGGCATT
LOC_Os01g66190
Target Sequence 
GCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATG
ATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACG
AAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTC
CTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCA
AGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTT
CTTCCTCTTACTACCTTAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAGCTTGACTCATCA
TTAGTTTAGTACTCAAATCTCATTTATCAAAGTGGCATGTAGCTGGATGTTGCAAAGGCTGAGGAGCTGTGCATCTGGCA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis