Browse Element(s) Details


Os.11485.1.S1_at

Description gb:AK121662.1
DB_XREF= gi:37991285
TID=Os.11485.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064H20, full insert sequence.
FL= gb:AK121662.1 gb:AK060676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g661809/11Cytochrome c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008283biological_processcell proliferation
GO:0005739cellular_componentmitochondrion
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11485.1.S1_at--575--2691NONE
AAGCATGGGCCAAACTTGAACGGTT
NONE
Os.11485.1.S1_at--1007--6191Chr01:38771782..38771806 (25 bp)
GAGGCAATCTGGTACAGCTCCTGGT
LOC_Os01g66180
Os.11485.1.S1_at--212--10591Chr01:38771807..38771831 (25 bp)
TTCTCTTACCCATCTGGCGACAAGA
LOC_Os01g66180
Os.11485.1.S1_at--760--5491Chr01:38771854..38771878 (25 bp)
GAACACTTTGTATGACTACCTGCTT
LOC_Os01g66180
Os.11485.1.S1_at--809--1991NONE
ACTCCTAAGAAGTACACTCCTGCCA
NONE
Os.11485.1.S1_at--1037--8511Chr01:38772918..38772942 (25 bp)
TGGACTGAAGCAGCCACAGGACCGT
LOC_Os01g66180
Os.11485.1.S1_at--207--9111Chr01:38772942..38772966 (25 bp)
TGCTGATCTCATCGCATACCTGAAG
LOC_Os01g66180
Os.11485.1.S1_at--293--5971Chr01:38773012..38773036 (25 bp)
GAGAAGCTTATTGCTCGTAGCCTCA
LOC_Os01g66180
Os.11485.1.S1_at--407--4031Chr01:38773027..38773051 (25 bp)
CGTAGCCTCATACTGACTCTTTGTA
LOC_Os01g66180
Os.11485.1.S1_at--543--9791Chr01:38773101..38773125 (25 bp)
TAAGCAGTGGCCTCGTGGAAGAGAC
LOC_Os01g66180
Os.11485.1.S1_at--507--7591Chr01:38773146..38773170 (25 bp)
GGGCAGCTGCGAGCTATTCTTTGGC
LOC_Os01g66180
Target Sequence 
AAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAA
GATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGG
GGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTG
CTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTG
CAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCA
GCTGCGAGCTATTCTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis