Browse Element(s) Details


Os.27670.1.S1_at

Description gb:AK063875.1
DB_XREF= gi:32973893
TID=Os.27670.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F02, full insert sequence.
FL= gb:AK063875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6617010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27670.1.S1_at--1104--5011Chr01:38765627..38765651 (25 bp)
GCAGTGGCCTTTCTTATTGCTAGAT
LOC_Os01g66170
Os.27670.1.S1_at--486--10331Chr01:38765519..38765543 (25 bp)
TTTAAGGTTGTTACTCTGCTGCGGC
LOC_Os01g66170
Os.27670.1.S1_at--954--2531Chr01:38765465..38765489 (25 bp)
AACTACTTGTATGGCTTGACTTCAG
LOC_Os01g66170
Os.27670.1.S1_at--799--5691Chr01:38765448..38765472 (25 bp)
GACTTCAGTGAAGTTCTTGCCTTAT
LOC_Os01g66170
Os.27670.1.S1_at--759--631Chr01:38765125..38765149 (25 bp)
ATGCTTCCAGGATCATGGGCCTATG
LOC_Os01g66170
Os.27670.1.S1_at--153--4451Chr01:38765107..38765131 (25 bp)
GCCTATGTCAGTGCTGGTGCATTTG
LOC_Os01g66170
Os.27670.1.S1_at--579--6191Chr01:38764398..38764422 (25 bp)
GAGGAAACAGCCAGCTACTGACACT
LOC_Os01g66170
Os.27670.1.S1_at--1128--2151Chr01:38764354..38764378 (25 bp)
ACAGCCATTGCTGCTACATATGTAA
LOC_Os01g66170
Os.27670.1.S1_at--1002--9811Chr01:38764120..38764144 (25 bp)
TAAAATGCGGCCTTCTGATACTAGC
LOC_Os01g66170
Os.27670.1.S1_at--890--9691Chr01:38764024..38764048 (25 bp)
TCAAAGGACTCCCAGATGCTCGTTG
LOC_Os01g66170
Os.27670.1.S1_at--897--9011NONE
TGCAATGCTAAATCTCTCTCTTATG
NONE
Target Sequence 
GCAGTGGCCTTTCTTATTGCTAGATACTTTGCCAGAGAGCGAATTCTCAAATTGGTTGAAGGAAACAAGAAGTTTCTGGC
AATTGACAAAGCAATAGGTGAAAATGGATTTAAGGTTGTTACTCTGCTGCGGCTTAGTCCCCTATTACCTTTCTNTCTTG
GGAACTACTTGTATGGCTTGACTTCAGTGAAGTTCTTGCCTTATGTCTTGGGAAGTTGGTTGGGAATGCTTCCAGGATCA
TGGGCCTATGTCAGTGCTGGTGCATTTGGACGAGCTATAATTCAAGATGAGTCAGAGATCGGTTTGGGAGGAAACAGCCA
GCTACTGACACTGGGNATCGGGCTATTATTCACAGCCATTGCTGCTACATATGTAACACGACTTGCAAAGGATGCTGTAA
AGGAGATCGATGAATANAATGGTAGGATTCTCTAGTAAAATGCGGCCTTCTGATACTAGCATANTAGCCCATTGTACATC
ATCACNGTCATCTTTGATGCAATNCTGATCTANCTAGAAATTCAAGCAATTTTTCAAAGGACTCCCAGATGCTCGTTGGN
ATGCAATGCTAAATCTCTCTCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis