Browse Element(s) Details


OsAffx.23934.1.S1_at

Description tigr:9629.m06561
TID=OsAffx.23934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6616011/11selenium-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23934.1.S1_at--1136--8551Chr01:38763397..38763421 (25 bp)
TGGATCCGACGGACGCCATGCCGTA
LOC_Os01g66160
OsAffx.23934.1.S1_at--827--4331Chr01:38763412..38763436 (25 bp)
CCATGCCGTACGTCATGCTGTCCAA
LOC_Os01g66160
OsAffx.23934.1.S1_at--994--611Chr01:38763426..38763450 (25 bp)
ATGCTGTCCAACCTCTACTCGCGGG
LOC_Os01g66160
OsAffx.23934.1.S1_at--494--2131Chr01:38763571..38763595 (25 bp)
ACAGGGATCACCAGCGGGCGGCGGA
LOC_Os01g66160
OsAffx.23934.1.S1_at--1011--7591Chr01:38763642..38763666 (25 bp)
GGGCACGTGCCGGACACCGAGTGGG
LOC_Os01g66160
OsAffx.23934.1.S1_at--1038--531Chr01:38763771..38763795 (25 bp)
ATCCGCGTGTACAAGAACCTCCGGG
LOC_Os01g66160
OsAffx.23934.1.S1_at--736--4153Chr11:15839847..15840313 (25 bp)
CGCCGCGATCAAGATGGTCGCCGAG
NONE
OsAffx.23934.1.S1_at--691--1051Chr01:38763835..38763859 (25 bp)
AGGTGTACGGCAGGGAGATCATACT
LOC_Os01g66160
OsAffx.23934.1.S1_at--28--6051Chr01:38763849..38763873 (25 bp)
GAGATCATACTGAGAGACTCCAACT
LOC_Os01g66160
OsAffx.23934.1.S1_at--823--1971Chr01:38763857..38763881 (25 bp)
ACTGAGAGACTCCAACTGCTTCCAT
LOC_Os01g66160
OsAffx.23934.1.S1_at--486--9211Chr01:38763867..38763891 (25 bp)
TCCAACTGCTTCCATCACATGAAGG
LOC_Os01g66160
Target Sequence 
TGGATCCGACGGACGCCATGCCGTACGTCATGCTGTCCAACCTCTACTCGCGGGCGCGGCGGTGGGGCGACGTGGCGAGG
GTGCGCGCGCTGATGAGGTCGCGGGGCATCAGCAAGGAGCCCGGGTGCAGCTGGGTGGTGGTCGCCGGCGTGACGCACGT
GTTCCACGCCGGGGACAGGGATCACCAGCGGGCGGCGGAGATCTACCGGAAGGCGGAGGAGATGGCGGCGAGGATCCGGG
CTCGGGGGCACGTGCCGGACACCGAGTGGGCGCTGCAGGACGAGGCGCCGGAGGGGAGGGAGATGGGGCTGGCTCACCAC
GGCGAGAGGCTCGCCGTCGCGTTCGGCCTCCTCGCCGTGCCAGCCGCCGCGCCCATCCGCGTGTACAAGAACCTCCGGGT
GTGCGGCGACTGCCACGCCGCGATCAAGATGGTCGCCGAGGTGTACGGCAGGGAGATCATACTGAGAGACTCCAACTGCT
TCCATCACATGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis