Browse Element(s) Details


Os.56653.1.S1_at

Description gb:AK110253.1
DB_XREF= gi:32995462
TID=Os.56653.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-162-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-162-H08, full insert sequence.
FL= gb:AK110253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6625011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56653.1.S1_at--194--991Chr01:38810322..38810346 (25 bp)
AGGAGGGATCTCGATGATCCCGCCT
LOC_Os01g66250
Os.56653.1.S1_at--1044--6371Chr01:38810337..38810361 (25 bp)
GATCCCGCCTCGTTTAGCATCAGAG
LOC_Os01g66250
Os.56653.1.S1_at--551--9371Chr01:38810394..38810418 (25 bp)
TCGAGTCTTCCGATAACCGAAAAGG
LOC_Os01g66250
Os.56653.1.S1_at--517--4111Chr01:38810411..38810435 (25 bp)
CGAAAAGGTTGACGTGTACAGCTAC
LOC_Os01g66250
Os.56653.1.S1_at--1137--8711Chr01:38810438..38810462 (25 bp)
TGTCGTGCTTCTGGAGCTGGTTAGA
LOC_Os01g66250
Os.56653.1.S1_at--169--211Chr01:38810479..38810503 (25 bp)
ATTTGGCCACGGATAGCGTTGGTGA
LOC_Os01g66250
Os.56653.1.S1_at--945--491Chr01:38810563..38810587 (25 bp)
ATCGGACATGGGTAATCAGCTTGGT
LOC_Os01g66250
Os.56653.1.S1_at--1014--3371Chr01:38810579..38810603 (25 bp)
CAGCTTGGTGGATCGTAGGTTGAAT
LOC_Os01g66250
Os.56653.1.S1_at--726--10011Chr01:38810606..38810630 (25 bp)
TAGCTTCGTTTACTCACAGGTGGCG
LOC_Os01g66250
Os.56653.1.S1_at--698--5171Chr01:38810759..38810783 (25 bp)
GCAAGCAATCTGATGGCAATGTTGT
LOC_Os01g66250
Os.56653.1.S1_at--874--6631Chr01:38810779..38810803 (25 bp)
GTTGTAGTTGTAAACCTCCTGTACA
LOC_Os01g66250
Target Sequence 
AGGAGGGATCTCGATGATCCCGCCTCGTTTAGCATCAGAGGGACCAGAGGGTACATGGCTCCGGAATGGGTTTCGAGTCT
TCCGATAACCGAAAAGGTTGACGTGTACAGCTACGGTGTCGTGCTTCTGGAGCTGGTTAGAGGGGCCAGAATGGCGGATT
TGGCCACGGATAGCGTTGGTGATGCGGAGATTGCGATGAGACAGTTGGTGTGGAAGATCAGGGAAGGGTTGAAGATTGGT
GATCGGACATGGGTAATCAGCTTGGTGGATCGTAGGTTGAATGGTAGCTTCGTTTACTCACAGGTGGCGTTGATGCTGGA
GGTGGCTACGTCGTGTTTGGAGAAAGAAAGGAACCAAAGACCAAGTATGAATGATGTAGTTAAGAAGTTTTACACATCAG
ACAAAAAGGTTGAATTCATTGGGGAAATGTCAAGCTAGCAAGCAATCTGATGGCAATGTTGTAGTTGTAAACCTCCTGTA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis