Browse Element(s) Details


Os.28021.1.S1_a_at

Description gb:AY551913.1
DB_XREF= gi:45385947
TID=Os.28021.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28021 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS207 mRNA, complete cds.
PROD=MADS-box protein RMADS207
FL= gb:AY551913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6629011/11Floral homeotic protein AGAMOUS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010047biological_processfruit dehiscence
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0048497biological_processmaintenance of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28021.1.S1_a_at--850--1071Chr01:38830575..38830599 (25 bp)
AGGGCATCAGCCGAATTCGATCAAA
LOC_Os01g66290
Os.28021.1.S1_a_at--764--1531Chr01:38830888..38830912 (25 bp)
AGCATGAGCTGCTGTTCTCGGAGAT
LOC_Os01g66290
Os.28021.1.S1_a_at--623--3771Chr01:38830904..38830928 (25 bp)
CTCGGAGATCGAATACATGCAGAAA
LOC_Os01g66290
Os.28021.1.S1_a_at--900--4071Chr01:38831093..38831117 (25 bp)
CGAGAACATGTTCCTGAGAGCCAAG
LOC_Os01g66290
Os.28021.1.S1_a_at--771--4511Chr01:38831250..38831274 (25 bp)
GCCGAGCGAGCTGAACATGATGATC
LOC_Os01g66290
Os.28021.1.S1_a_at--758--8371Chr01:38831360..38831384 (25 bp)
GGCGACGTTCGACACAAGGGAATAC
LOC_Os01g66290
Os.28021.1.S1_a_at--830--2871Chr01:38831375..38831399 (25 bp)
AAGGGAATACTACCAGCCGGCGCCG
LOC_Os01g66290
Os.28021.1.S1_a_at--881--10491Chr01:38831487..38831511 (25 bp)
TTCAAGGTCGACTCCGGCAAAGGCG
LOC_Os01g66290
Os.28021.1.S1_a_at--354--2311Chr01:38831505..38831529 (25 bp)
AAAGGCGGCCTCCTCTAGATCGATC
LOC_Os01g66290
Os.28021.1.S1_a_at--1152--8691Chr01:38831571..38831595 (25 bp)
TGTATTCCGTAAGAGCGACGACGAT
LOC_Os01g66290
Os.28021.1.S1_a_at--73--291Chr01:38831625..38831649 (25 bp)
ACGTATAGTACGCTGGTAGACCTAC
LOC_Os01g66290
Target Sequence 
AGGGCATCAGCCGAATTCGATCAAAGAAGCATGAGCTGCTGTTCTCGGAGATCGAATACATGCAGAAAAGGGAAGCAGAT
CTTCAGAACGAGAACATGTTCCTGAGAGCCAAGGTGGCAGAGGCCGAGCGAGCTGAACATGATGATCAGCAGGCGGCGGA
GGACGACGAGATGGCGCCGGCGCCGGCGGTCGGCGGCGGGTCATCGTCGGGGACAGAGCTGGAGGCGCTGCCGGCGACGT
TCGACACAAGGGAATACTACCAGCCGGCGCCGCCGGTGAGCATGCTGGCCGCCGCGGCGGCGGCGGCGGCGGCGCAGTAC
TCGTCGGACCACCACCAGACTGCTCTCCACCTCGGCTACTTCAAGGTCGACTCCGGCAAAGGCGGCCTCCTCTAGATCGA
TCGCCATGGATGCAAATATTGCATGCATTCGATCGAATTATACTGTATTCCGTAAGAGCGACGACGATGAAGATGACAAT
AATTATTGTGGTATTGTACGTATAGTACGCTGGTAGACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28021.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis