Browse Element(s) Details


Os.31998.1.S1_at

Description gb:AK106349.1
DB_XREF= gi:32991558
TID=Os.31998.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434C04.2 (P0434C04.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H09, full insert sequence.
FL= gb:AK106349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6628011/11Uncharacterized ACR, COG1678 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31998.1.S1_at--399--6171Chr01:38818692..38818716 (25 bp)
GAGGACTACCGATGACAGACCAATT
LOC_Os01g66280
Os.31998.1.S1_at--964--891Chr01:38818644..38818668 (25 bp)
AGGCGTCTGCTTCGGTTTCAGGACT
LOC_Os01g66280
Os.31998.1.S1_at--1051--5951Chr01:38818613..38818637 (25 bp)
GAGAAGGCCAGTGCTCTTTTGAAGA
LOC_Os01g66280
Os.31998.1.S1_at--534--8631Chr01:38818551..38818575 (25 bp)
TGGGTACTCTGCCTGGGATTACGAC
LOC_Os01g66280
Os.31998.1.S1_at--988--6471Chr01:38818501..38818525 (25 bp)
GATACTGGCATGTCACTTCCTGTAG
LOC_Os01g66280
Os.31998.1.S1_at--837--8831Chr01:38818468..38818492 (25 bp)
TGATAAGCGACTCCCTTGCAACAGA
LOC_Os01g66280
Os.31998.1.S1_at--493--6371Chr01:38818445..38818469 (25 bp)
GATCCTTCTTGCCTATGGACTGAGA
LOC_Os01g66280
Os.31998.1.S1_at--320--8331Chr01:38818364..38818388 (25 bp)
GGCTCGTGAAAATTCTTGCTTGCTA
LOC_Os01g66280
Os.31998.1.S1_at--863--11Chr01:38818300..38818324 (25 bp)
ATTGGGAATAATCTCGCCCGGTCAC
LOC_Os01g66280
Os.31998.1.S1_at--638--1191Chr01:38818248..38818272 (25 bp)
AGTAGTTTCATGTGGTCGTCTTTGT
LOC_Os01g66280
Os.31998.1.S1_at--1143--9391Chr01:38818233..38818257 (25 bp)
TCGTCTTTGTCCTCTGTATTACTTG
LOC_Os01g66280
Target Sequence 
GAGGACTACCGATGACAGACCAATTAAGGGGTTCGAAGAGGTGTCGCCAGGCGTCTGCTTCGGTTTCAGGACTGACCTAG
AGAAGGCCAGTGCTCTTTTGAAGAGTGGCGCGGTTAAGCCTGAGGACTTAAACTTCTATGTTGGGTACTCTGCCTGGGAT
TACGACCAGTTGTTGAGCGAGATTGATCAAGGATACTGGCATGTCACTTCCTGTAGCTCAGGCCTGATAAGCGACTCCCT
TGCAACAGATCCTTCTTGCCTATGGACTGAGATATTGAAGCTGATGGGAGGCCAGTACGCAGAACTGAGTCAAAAGCCAA
AGGAAGATGGCTCGTGAAAATTCTTGCTTGCTAGCATAGTTTGGCACAATTGACGTGCTTGGTTTGTACATAATTGGGAA
TAATCTCGCCCGGTCACTGGCCAGGGTAATTGAACAGTCCTAGTAGTAGTTTCATGTGGTCGTCTTTGTCCTCTGTATTA
CTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis