Browse Element(s) Details


Os.5195.1.S1_at

Description gb:AK059523.1
DB_XREF= gi:32969541
TID=Os.5195.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C09, full insert sequence.
FL= gb:AK059523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6624011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5195.1.S1_at--40--5351Chr01:38806821..38806845 (25 bp)
GAAGTTTGCATAGATGGGCTCTTGA
LOC_Os01g66240
Os.5195.1.S1_at--669--5191Chr01:38806857..38806881 (25 bp)
GAATTCATACTGCTGAGGAACTGGC
LOC_Os01g66240
Os.5195.1.S1_at--600--651Chr01:38806907..38806931 (25 bp)
ATGCACGTGCTTGAAGATGCTGGAC
LOC_Os01g66240
Os.5195.1.S1_at--943--4711Chr01:38806925..38807190 (25 bp)
GCTGGACATTGGGTTCATGCAGATA
LOC_Os01g66240
Os.5195.1.S1_at--1058--3631Chr01:38807225..38807249 (25 bp)
CTTCCGCATCGAGGCTACCATAAGA
LOC_Os01g66240
Os.5195.1.S1_at--218--51Chr01:38807260..38807284 (25 bp)
ATTGAGGTGCAGAAGCCCCAAAACA
LOC_Os01g66240
Os.5195.1.S1_at--691--4371Chr01:38807277..38807301 (25 bp)
CCAAAACAGCTTCTGCACTATGCAG
LOC_Os01g66240
Os.5195.1.S1_at--892--6131Chr01:38807421..38807445 (25 bp)
GAGGGATCAAGCTAACTGCCAACAT
LOC_Os01g66240
Os.5195.1.S1_at--466--8671Chr01:38807449..38807473 (25 bp)
TGTGTGTGGGTCATTTGTTCATTCA
LOC_Os01g66240
Os.5195.1.S1_at--811--6551Chr01:38807477..38807501 (25 bp)
GATTCTTCGATCTTGTATGTAACAT
LOC_Os01g66240
Os.5195.1.S1_at--531--671Chr01:38807500..38807524 (25 bp)
ATGACAGTCGGCTGCAGTTCTTGGA
LOC_Os01g66240
Target Sequence 
GAAGTTTGCATAGATGGGCTCTTGATGATCTCCAGAGAATTCATACTGCTGAGGAACTGGCTGCAGATGAGGGTGGAGGA
GTTGAAATGCACGTGCTTGAAGATGCTGGACATTGGGTTCATGCAGATAACCCTGATGGGCTATTTAGAATTCTNTCATC
AACCTTCCGCATCGAGGCTACCATAAGAGGGATGCAGAATTGAGGTGCAGAAGCCCCAAAACAGCTTCTGCACTATGCAG
TACTACTGTACGTGCGTAGGGTAGACAATACATTACATGAAGAGAGAAGACACATGAAAGGCATCAACACAAACTTGTAT
TCAGTTTTGTAGAATATGAAGAGCTGAAAAAACTTCAGCGAGGGATCAAGCTAACTGCCAACATTGTTGTGTGTGGGTCA
TTTGTTCATTCATTTGATTCTTCGATCTTGTATGTAACATGACAGTCGGCTGCAGTTCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis