Browse Element(s) Details


Os.7339.1.S1_at

Description gb:AK104810.1
DB_XREF= gi:32990019
TID=Os.7339.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (OSJNBa0018F16.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full insert sequence.
FL= gb:AK104810.1 gb:AK071137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3185011/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed
LOC_Os10g31840OsAffx.30629.1.S1_at11/1110+16373378..16373719hypothetical protein
LOC_Os10g31850Os.7339.1.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31850Os.7339.2.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7339.1.S1_at--1009--8971Chr10:16375990..16376014 (25 bp)
TGAACTTCCACGTCCTGGCGCAGAA
LOC_Os10g31850
Os.7339.1.S1_at--585--9851Chr10:16375946..16375970 (25 bp)
TACAACACCCGGGAGACCAGAGGCT
LOC_Os10g31850
Os.7339.1.S1_at--829--4571Chr10:16375902..16375926 (25 bp)
GCGCTCCACGGTTTGATTTCAGCAG
LOC_Os10g31850
Os.7339.1.S1_at--677--6611Chr10:16375853..16375877 (25 bp)
GTTGGCATCCATCTCACAAACTAAG
LOC_Os10g31850
Os.7339.1.S1_at--300--1351Chr10:16375799..16375823 (25 bp)
AGAGACGGCTTCCTCTGAACTTAGC
LOC_Os10g31850
Os.7339.1.S1_at--903--8951Chr10:16375784..16375808 (25 bp)
TGAACTTAGCCGTCGAGCAAAAGCT
LOC_Os10g31850
Os.7339.1.S1_at--373--491Chr10:16375750..16375774 (25 bp)
ATCGGCGTCGAGTTTGGTAGACACA
LOC_Os10g31850
Os.7339.1.S1_at--871--7831Chr10:16375735..16375759 (25 bp)
GGTAGACACACTTTGCGCCAAGAGG
LOC_Os10g31850
Os.7339.1.S1_at--320--171Chr10:16375701..16375725 (25 bp)
ATTTTGGCGCAGTATGCAGCGAGTT
LOC_Os10g31850
Os.7339.1.S1_at--548--5071Chr10:16375686..16375710 (25 bp)
GCAGCGAGTTGAATAGCCCATATAT
LOC_Os10g31850
Os.7339.1.S1_at--1008--231Chr10:16375667..16375691 (25 bp)
ATATATGTTGTGTTTTCTCTCTCTC
LOC_Os10g31850
Target Sequence 
TGAACTTCCACGTCCTGGCGCAGAAGTGCCCCGGATGCAGCTCCTACAACACCCGGGAGACCAGAGGCTGCGGCCGCCCT
GCAGCCGCGCGCTCCACGGTTTGATTTCAGCAGCAGGAGCAGCAGCAGCAGAGACGAGTTGGCATCCATCTCACAAACTA
AGGATGAAATCGAGAGCGACAAACAAGATGCAGAGACGGCTTCCTCTGAACTTAGCCGTCGAGCAAAAGCTGCAAAATCG
ATCGGCGTCGAGTTTGGTAGACACACTTTGCGCCAAGAGGAGTATGGTGATTTTGGCGCAGTATGCAGCGAGTTGAATAG
CCCATATATGTTGTGTTTTCTCTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis