Browse Element(s) Details


Os.17679.1.S1_at

Description gb:AK065653.1
DB_XREF= gi:32975671
TID=Os.17679.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037F04, full insert sequence.
FL= gb:AK065653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17679.1.S1_at--1130--4891Chr04:30877252..30877276 (25 bp)
GCTTCAGTGGCACCTCGAGATACAA
LOC_Os04g52330
Os.17679.1.S1_at--1079--5451Chr04:30877218..30877242 (25 bp)
GAACGGGAAGATTTACGAGCACAAA
LOC_Os04g52330
Os.17679.1.S1_at--332--6451Chr04:30877190..30877214 (25 bp)
GATAATTTGGCACTGGACTTTCCCC
LOC_Os04g52330
Os.17679.1.S1_at--212--1691Chr04:30877113..30877137 (25 bp)
ACCAAGCCCCAATTTGACGTTCTGG
LOC_Os04g52330
Os.17679.1.S1_at--41--3171Chr04:30877104..30877128 (25 bp)
CAATTTGACGTTCTGGGACATGGTT
LOC_Os04g52330
Os.17679.1.S1_at--820--7311Chr04:30877062..30877086 (25 bp)
GTGCTCATGGGCAAATCTCTACCAG
LOC_Os04g52330
Os.17679.1.S1_at--568--2271Chr04:30877050..30877074 (25 bp)
AAATCTCTACCAGGCGGTGGTGGAA
LOC_Os04g52330
Os.17679.1.S1_at--285--8211Chr04:30877014..30877038 (25 bp)
GGAAGGCAATGATCCTGCTGGCATT
LOC_Os04g52330
Os.17679.1.S1_at--1082--3591Chr04:30876993..30877017 (25 bp)
CATTGCCATTGAAGGTCTGCTTACT
LOC_Os04g52330
Os.17679.1.S1_at--1010--1011Chr04:30876981..30877005 (25 bp)
AGGTCTGCTTACTTGTTCATAGGAT
LOC_Os04g52330
Os.17679.1.S1_at--792--5911Chr04:30876951..30876975 (25 bp)
GAGCTTCAGGGCTAGCTGCTTGGTA
LOC_Os04g52330
Target Sequence 
GCTTCAGTGGCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACAAAGTCGATAATTTGGCACTGGAC
TTTCCCCGNCCAGCAGCCNAAGTNGGCAGCATTGCTGACATTGTNGTCGCCNCATGCCCACCAAGCCCCAATTTGACGTT
CTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGCAAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGCNGG
AAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGC
TTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis