Browse Element(s) Details


Os.17749.1.A1_at

Description gb:CB623311
DB_XREF= gi:29618299
DB_XREF=OSIIEa10P22.r
CLONE=OSIIEa10P22
TID=Os.17749.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.17749 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179091.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5545011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein
LOC_Os03g55490Os.27816.1.S1_at11/113+31504991..31509412Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17749.1.A1_at--648--5851Chr03:31482445..31482469 (25 bp)
GACCAATTGGCCTACACAGCTTGAA
LOC_Os03g55450
Os.17749.1.A1_at--321--2331Chr03:31482421..31482445 (25 bp)
AAAGATACAGGCAACGTCGTTTGGT
LOC_Os03g55450
Os.17749.1.A1_at--660--6851Chr03:31482403..31482427 (25 bp)
GTTTGGTGAATGAGCCCGATTGCCC
LOC_Os03g55450
Os.17749.1.A1_at--613--4531Chr03:31482390..31482414 (25 bp)
GCCCGATTGCCCTGTTTTTGATAAA
LOC_Os03g55450
Os.17749.1.A1_at--953--8071Chr03:31482315..31482339 (25 bp)
GGAGCTATGGAGCACCAGATGCAAA
LOC_Os03g55450
Os.17749.1.A1_at--1018--6311Chr03:31482298..31482322 (25 bp)
GATGCAAATCTCAGGGCTGCTTCAC
LOC_Os03g55450
Os.17749.1.A1_at--307--1091Chr03:31482286..31482310 (25 bp)
AGGGCTGCTTCACTCATGAGCAAGC
LOC_Os03g55450
Os.17749.1.A1_at--617--6491Chr03:31482083..31482107 (25 bp)
GATAGTGCTTCTAGGGTTTCTCCGT
LOC_Os03g55450
Os.17749.1.A1_at--156--10031Chr03:31482048..31482072 (25 bp)
TAGAGCATAGTTTTCCTTGTTTCAG
LOC_Os03g55450
Os.17749.1.A1_at--935--6511Chr03:31481985..31482009 (25 bp)
GATATATTTTCATTGCTCCTGTACA
LOC_Os03g55450
Os.17749.1.A1_at--77--3231Chr03:31481943..31481967 (25 bp)
CAACTATTGCTTGTAATCAGGGTGC
LOC_Os03g55450
Target Sequence 
GACCAATTGGCCTACACAGCTTGAAAAGATACAGGCAACGTCGTTTGGTGAATGAGCCCGATTGCCCTGTTTTTGATAAA
CCTTCAAAAAGAGGCGTGGTCTGTTGAAAAATACTGTCACTGAAGTAAATGGAGCTATGGAGCACCAGATGCAAATCTCA
GGGCTGCTTCACTCATGAGCAAGCAAAGCTGAAACAAGTGACCAATTGGAGCTGTGATGGACAGATGTCATGNGTTCTTC
CTTGAGAATTGATGGCAGTTGGTATAAACGAGAGAATCGATAGTGCTGGTTGATGTCGTGGGACAAATTGAGCAACTTGT
CGATAAACACTTANAGGCTTGGCATGTAACACATGGNATTCTGATAGTGCTTCTAGGGTTTCTCCGTGATGTTGTAATAG
AGCATAGTTTTCCTTGTTTCAGATTGAGTTGCTATATTTTTTTGCAGTGACCATAAGAGTGATATATTTTCATTGCTCCT
GTACATTGTATTCAGATTATGGCAACTATTGCTTGTAATCAGGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17749.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis