Browse Element(s) Details


Os.17758.1.A1_at

Description gb:AK108811.1
DB_XREF= gi:32994020
TID=Os.17758.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-E01, full insert sequence.
FL= gb:AK108811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1571010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15660NANA8+9503997..9509070transposon protein, putative, unclassified
LOC_Os08g15670OsAffx.8916.1.S1_at2/118+9510238..9511811hypothetical protein
LOC_Os08g15680OsAffx.29222.1.S1_x_at10/118+9516158..9517349hypothetical protein
LOC_Os08g15680OsAffx.29222.1.S1_at9/118+9516158..9517349hypothetical protein
LOC_Os08g15690NANA8+9519569..9521147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15700NANA8+9521896..9524495retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15710Os.17758.1.A1_at10/118+9531782..9533413expressed protein
LOC_Os08g15720NANA8+9537563..9539377retrotransposon protein, putative, LINE subclass
LOC_Os08g15730OsAffx.29223.1.S1_at11/118+9541058..9541267hypothetical protein
LOC_Os08g15740NANA8+9541644..9543134hypothetical protein
LOC_Os08g15750Os.46314.3.S1_at2/118+9544777..9546437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15760NANA8+9547078..9547593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15770OsAffx.29224.1.S1_at10/118+9548699..9550001hypothetical protein
LOC_Os08g15780OsAffx.29225.1.S1_at11/118+9553402..9554100DC1 domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17758.1.A1_at--148--8551Chr08:9533057..9533081 (25 bp)
TGGAGCGCGCTGACCAGAGCAGTAA
LOC_Os08g15710
Os.17758.1.A1_at--877--8391Chr08:9533090..9533114 (25 bp)
GGCGCGTATGTAAGATCCTTGTGAT
LOC_Os08g15710
Os.17758.1.A1_at--564--431Chr08:9533113..9533137 (25 bp)
ATCTTGGTGCGTGTCGTCGTCAGGA
LOC_Os08g15710
Os.17758.1.A1_at--369--1391Chr08:9533148..9533172 (25 bp)
AGACCCGACCGCGTTGTTGACAGAA
LOC_Os08g15710
Os.17758.1.A1_at--190--991Chr08:9533172..9533196 (25 bp)
AGGAGTGAGCGCTATCGTGTCTCCA
LOC_Os08g15710
Os.17758.1.A1_at--885--3991Chr08:9533187..9533211 (25 bp)
CGTGTCTCCATGGTGATGCTGTATA
LOC_Os08g15710
Os.17758.1.A1_at--515--8771NONE
TGTATATATATAGCCCGCGAACGCC
NONE
Os.17758.1.A1_at--227--8411Chr08:9533243..9533267 (25 bp)
GGCCGTATATATGTGCTCGTTTTCT
LOC_Os08g15710
Os.17758.1.A1_at--395--3791Chr08:9533258..9533282 (25 bp)
CTCGTTTTCTTCGTGTGATCTAAGT
LOC_Os08g15710
Os.17758.1.A1_at--771--511Chr08:9533337..9533361 (25 bp)
ATCGTTTTACACTTCATCTTCATGG
LOC_Os08g15710
Os.17758.1.A1_at--352--231Chr08:9533388..9533412 (25 bp)
ATATATGGGACTGCCGCCTATACAT
LOC_Os08g15710
Target Sequence 
TGGAGCGCGCTGACCAGAGCAGTAAGCTGGAGAGGCGCGTATGTAAGATCCTTGTGATCTTGGTGCGTGTCGTCGTCAGG
ATGCTCATCGGAGACCCGACCGCGTTGTTGACAGAAGGAGTGAGCGCTATCGTGTCTCCATGGTGATGCTGTATATATAT
AGCCCGCGAACGCCTAGCTAGCTTAAGGCCGTATATATGTGCTCGTTTTCTTCGTGTGATCTAAGTAGTAGTACGTACTA
CTCCATAAAGTTATTTTTGACAACGTAGAATATATATGGTATCGTTTTACACTTCATCTTCATGGTGGAAAGCTATTTTA
AATCTACAAATATATATGGGACTGCCGCCTATACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17758.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis