Browse Element(s) Details


Os.17789.1.S1_a_at

Description gb:AK068843.1
DB_XREF= gi:32978868
TID=Os.17789.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pol polyprotein (OSJNBa0094K20.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169F09, full insert sequence.
FL= gb:AK068843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3103011/11MT-A70 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31000Os.8950.1.S2_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31000Os.8950.1.S1_a_at11/1110+15851407..15855642Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed
LOC_Os10g31010OsAffx.19542.3.S1_x_at4/1110+15858680..15859324retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31020NANA10+15862719..15866051retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31030Os.17789.1.S1_a_at11/1110+15871859..15878533MT-A70 family protein, expressed
LOC_Os10g31040Os.7688.1.S1_at11/1110+15896022..15909454expressed protein
LOC_Os10g31040Os.7688.2.S1_x_at10/1110+15896022..15909454expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17789.1.S1_a_at--962--10171Chr10:15877838..15877862 (25 bp)
TATAGGATCATCGAGCATTTTGCTC
LOC_Os10g31030
Os.17789.1.S1_a_at--982--2911Chr10:15877867..15877891 (25 bp)
AAGGAGGCGCCTCGAACTCTTTGGT
LOC_Os10g31030
Os.17789.1.S1_a_at--825--2511Chr10:15877921..15877945 (25 bp)
AACTCTTGGGAAAGGCTTATCTTCA
LOC_Os10g31030
Os.17789.1.S1_a_at--250--6351Chr10:15878125..15878149 (25 bp)
GATGCTCCTCACCTTGTCGTTACAA
LOC_Os10g31030
Os.17789.1.S1_a_at--93--2491Chr10:15878242..15878266 (25 bp)
AACAGGCGGTCTGTCATGAACTCCT
LOC_Os10g31030
Os.17789.1.S1_a_at--483--671Chr10:15878257..15878281 (25 bp)
ATGAACTCCTCGCAGATCGTCGTGA
LOC_Os10g31030
Os.17789.1.S1_a_at--593--7191Chr10:15878275..15878299 (25 bp)
GTCGTGACGGTTGTTGGCTCTGAAA
LOC_Os10g31030
Os.17789.1.S1_a_at--989--812Chr10:15878316..15878340 (25 bp)
ATGGTCTTCCAACCCAATGTCAGGT
LOC_Os10g31030
Os.17789.1.S1_a_at--594--6911Chr10:15878345..15878369 (25 bp)
GTATGCCTGAATAGTTTTGTTCCAA
LOC_Os10g31030
Os.17789.1.S1_a_at--808--5551Chr10:15878371..15878395 (25 bp)
GAAACCATTCATTTATTCCTATACG
LOC_Os10g31030
Os.17789.1.S1_a_at--965--7011Chr10:15878413..15878437 (25 bp)
GTACATTCACTTTTACACGACAGAT
LOC_Os10g31030
Target Sequence 
TATAGGATCATCGAGCATTTTGCTCTTGGAAGGAGGCGCCTCGAACTCTTTGGTGAGGACCATAATATCCGTCCGGGCTG
GCTAACTCTTGGGAAAGGCTTATCTTCATCAAACTTCCATAAAGAGGCATACATCAAGAACTTCATGGACAGGGATGGAA
AAATATGGCAGGGAGGCGGCGGGCGGAATCCACCTCCAGATGCTCCTCACCTTGTCGTTACAACTCCAGAGATCGAGAGC
CTCCGTCCCAAGTCACCCCCGCAAAAGAGCCAGCAGCAGCAATCCATGCCTCCAATGGGATCTAGCAGTTCTACAAACAG
GCGGTCTGTCATGAACTCCTCGCAGATCGTCGTGACGGTTGTTGGCTCTGAAACAATGATGCCATCTCCATGGTCTTCCA
ACCCAATGTCAGGTTTTGGTATGCCTGAATAGTTTTGTTCCAAGGAAACCATTCATTTATTCCTATACGATTTTCATTAT
TGATGTGTACATTCACTTTTACACGACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17789.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis