Browse Element(s) Details


Os.17811.1.S1_at

Description gb:BI813652
DB_XREF= gi:16579557
DB_XREF=M001E11
CLONE=M001E11
TID=Os.17811.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GPAA1 - like protein (P0019E03.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4898011/11GPI transamidase component family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein
LOC_Os01g48980Os.17811.1.S1_at11/111+28444944..28450141GPI transamidase component family protein, putative, expressed
LOC_Os01g48990Os.7712.1.S1_a_at11/111+28453423..28457125Kinase C630.09c, putative, expressed
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003923molecular_functionGPI-anchor transamidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17811.1.S1_at--102--6931Chr01:28445317..28445341 (25 bp)
GTATGTATTTCTTGTCCATCTTCCC
LOC_Os01g48980
Os.17811.1.S1_at--891--431Chr01:28445300..28445324 (25 bp)
ATCTTCCCTGCTGGCTCTTGTGCAT
LOC_Os01g48980
Os.17811.1.S1_at--500--10831Chr01:28445283..28445307 (25 bp)
TTGTGCATCCATGTGTTGCTGCATC
LOC_Os01g48980
Os.17811.1.S1_at--281--3531Chr01:28445258..28445282 (25 bp)
CATGCTACCAGCCTGAATCAAAGAT
LOC_Os01g48980
Os.17811.1.S1_at--465--6871Chr01:28445215..28445239 (25 bp)
GTTTGGTCACGCATTGCTTTGAGGT
LOC_Os01g48980
Os.17811.1.S1_at--203--7891Chr01:28445193..28445217 (25 bp)
GGTTAGAGAACACTGCAAGTCTGTA
LOC_Os01g48980
Os.17811.1.S1_at--1059--6511Chr01:28445165..28445189 (25 bp)
GATATTCCTGATTTTGGGTGTGCTT
LOC_Os01g48980
Os.17811.1.S1_at--901--7711Chr01:28445150..28445174 (25 bp)
GGGTGTGCTTTGGTTGCCAACATCT
LOC_Os01g48980
Os.17811.1.S1_at--209--8131Chr01:28445097..28445121 (25 bp)
GGACTAGCAGCTTAGAAACATCGAT
LOC_Os01g48980
Os.17811.1.S1_at--196--3971Chr01:28445042..28445066 (25 bp)
CGGATGGGATAGTAAAGCCTGCTTA
LOC_Os01g48980
Os.17811.1.S1_at--234--8671Chr01:28444992..28445016 (25 bp)
TGTGTCACACTACTCAAACCACTGA
LOC_Os01g48980
Target Sequence 
GTATGTATTTCTTGTCCATCTTCCCTGCTGGCTCTTGTGCATCCATGTGTTGCTGCATCCATGCTACCAGCCTGAATCAA
AGATGAAGCANGGAGTAGCGTTTGTTTGGTCACGCATTGCTTTGAGGTTAGAGAACACTGCAAGTCTGTAATAGATATTC
CTGATTTTGGGTGTGCTTTGGTTGCCAACATCTTNGAAAGCAGCANCTTAGTTTTGTATGCAGGACTAGCAGCTTAGAAA
CATCGATGTATTTTTGNTGTTTCTTTTGGAAGAAGCACGGATGGGATAGTAAAGCCTGCTTATGTANANNATAGTGGTGG
TGTTTGTTGTGTCACACTACTCAAACCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis