Browse Element(s) Details


Os.17861.1.S2_at

Description gb:AK120135.1
DB_XREF= gi:37989758
TID=Os.17861.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027F03, full insert sequence.
FL= gb:AK120135.1 gb:AK106321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5102011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein
LOC_Os03g51000Os.46088.1.S1_s_at11/113+29088237..290961233,4-dihydroxy-2-butanone kinase, putative, expressed
LOC_Os03g51010Os.8043.1.S1_at11/113+29100698..29104260hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51040OsAffx.13452.1.S1_at10/113+29131475..29133714Protein kinase domain containing protein
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17861.1.S2_at--581--6071Chr03:29109098..29109122 (25 bp)
GAGTTTGTTGCATACCTTCTCGAGG
LOC_Os03g51020
Os.17861.1.S2_at--1068--2331Chr03:29109066..29109090 (25 bp)
AAAGAAGCGACCTAGTGCCTCAGAG
LOC_Os03g51020
Os.17861.1.S2_at--1127--2391Chr03:29109035..29109059 (25 bp)
AAACATCCATGGCTTTCTTTTCCGT
LOC_Os03g51020
Os.17861.1.S2_at--25--10671Chr03:29109016..29109040 (25 bp)
TTCCGTACGAGCCAATATCTTCATG
LOC_Os03g51020
Os.17861.1.S2_at--190--10171Chr03:29109001..29109025 (25 bp)
TATCTTCATGACACAGTTGCTACTG
LOC_Os03g51020
Os.17861.1.S2_at--769--2511Chr03:29108937..29108961 (25 bp)
AACATTTTCTCTTGGCGCTAAGCAA
LOC_Os03g51020
Os.17861.1.S2_at--341--2271Chr03:29108844..29108868 (25 bp)
AAATCTCATGAAGTGTGCTGCTGCT
LOC_Os03g51020
Os.17861.1.S2_at--1054--3011Chr03:29108788..29108812 (25 bp)
AATGCTGCCCTGTGTTGTGATGTAA
LOC_Os03g51020
Os.17861.1.S2_at--356--6791Chr03:29108712..29108736 (25 bp)
GTTAGATACTATTGCGACCCCATTT
LOC_Os03g51020
Os.17861.1.S2_at--460--9151Chr03:29108628..29108652 (25 bp)
TGCGCACTTCCATTTGTGGTTCTAA
LOC_Os03g51020
Os.17861.1.S2_at--232--4291Chr03:29108552..29108576 (25 bp)
CCTCCAGGCTTGTTTTGCCGAGAAT
LOC_Os03g51020
Target Sequence 
GAGTTTGTTGCATACCTTCTCGAGGTAAACCCAAAGAAGCGACCTAGTGCCTCAGAGGCNTTGAAACATCCATGGCTTTC
TTTTCCGTACGAGCCAATATCTTCATGACACAGTTGCTACTGGATGGTGATGTTTCCAAGCACTACTATATTGAGTGCCT
TAACATTTTCTCTTGGCGCTAAGCAACATGAAGTTTTGATTGATCAAGATGAAACATGTTCTACCACGACTTGCCCACAG
CACGACCAAAGTCCAAATCTCATGAAGTGTGCTGCTGCTGCTGGGACGGTCCTCGCCCCCCTGTACTACCAATGCTGCCC
TGTGTTGTGATGTAATATAACCTTCGGTTTTGTCAGTTCCTTGGCCCCAATGTAACAGGCCATTTGGTTAGATACTATTG
CGACCCCATTTTTAGGAATAGGGCTGTCATGTTGTACATGGTGTTTTTATTGTTGAACCATGTGCCTTGNTGCGCACTTC
CATTTGTGGTTCTAACCCATTCTTCTGTACATCTCGCACCTCNCAAGGTGCTTAGGAACTGNNNGCCCCTCCAGGCTTGT
TTTGCCGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17861.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis