Browse Element(s) Details


Os.17954.1.S1_at

Description gb:AK061440.1
DB_XREF= gi:32971458
TID=Os.17954.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C01, full insert sequence.
FL= gb:AK102197.1 gb:AK061440.1 gb:AK061940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4712011/11Acyl-CoA thioesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47090NANA4+27742439..27743838transposon protein, putative, unclassified
LOC_Os04g47100OsAffx.22848.3.S1_x_at2/114+27746726..27752684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47110OsAffx.14307.1.S1_at11/114+27761777..27762956hypothetical protein
LOC_Os04g47120Os.17954.1.S1_at11/114+27765032..27771465Acyl-CoA thioesterase family protein, expressed
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006637biological_processacyl-CoA metabolism
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17954.1.S1_at--1133--3671Chr04:27770517..27770541 (25 bp)
CTTTCTGATGATCCAGCACTGCATA
LOC_Os04g47120
Os.17954.1.S1_at--900--10011Chr04:27770627..27770651 (25 bp)
TAGCATATGCTTCGGATCTACTATA
LOC_Os04g47120
Os.17954.1.S1_at--32--6431Chr04:27770641..27770665 (25 bp)
GATCTACTATATTCTGGTGTCAGCC
LOC_Os04g47120
Os.17954.1.S1_at--903--9451Chr04:27770653..27770677 (25 bp)
TCTGGTGTCAGCCTAAATCCTCATA
LOC_Os04g47120
Os.17954.1.S1_at--916--5671Chr04:27770694..27770718 (25 bp)
GACATACTCACTCAGTCTTGATCAC
LOC_Os04g47120
Os.17954.1.S1_at--1062--8831Chr04:27770712..27770821 (25 bp)
TGATCACTCGATTTGGTTCCACAAG
LOC_Os04g47120
Os.17954.1.S1_at--909--9831Chr04:27770984..27771008 (25 bp)
TACAGGGCGAATGTTCAACCGACAA
LOC_Os04g47120
Os.17954.1.S1_at--742--3211Chr04:27771006..27771129 (25 bp)
CAAGGAGAGCTCGTCATGTCGTTGA
LOC_Os04g47120
Os.17954.1.S1_at--518--771Chr04:27771120..27771144 (25 bp)
ATGTCGTTGACCCAAGAGGCGCTGA
LOC_Os04g47120
Os.17954.1.S1_at--65--4031Chr04:27771224..27771248 (25 bp)
CGTTTCATTTTTGGCACTTTCACAG
LOC_Os04g47120
Os.17954.1.S1_at--76--2151Chr04:27771362..27771386 (25 bp)
ACAGCTTACTGACATACCACGTATG
LOC_Os04g47120
Target Sequence 
CTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCC
TCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATG
ATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGCGGGGNTTTTGTTACAGGGCGAATGTTCAACCGACA
AGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAA
GGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATG
GAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGG
TTCTGTAATTCACGAACAGCTTACTGACATACCACGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis