Browse Element(s) Details


Os.17961.1.S1_a_at

Description gb:AK104533.1
DB_XREF= gi:32989742
TID=Os.17961.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D08, full insert sequence.
FL= gb:AK060903.1 gb:AK104098.1 gb:AK104533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2056011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed
LOC_Os02g20550OsAffx.2698.1.S1_at11/112+12123596..12123874hypothetical protein
LOC_Os02g20560Os.17961.1.S1_a_at11/112+12127922..12129229Fasciclin domain containing protein, expressed
LOC_Os02g20570Os.46785.2.S1_x_at4/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.30226.2.S1_x_at2/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.442.1.S1_x_at1/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20579NANA2+12140042..12140245NA
LOC_Os02g20590OsAffx.24346.1.S1_x_at2/112+12143092..12144153BTB/POZ domain containing protein
LOC_Os02g20600OsAffx.24346.1.S1_at11/112+12146389..12147621BTB/POZ domain containing protein
LOC_Os02g20600OsAffx.24346.1.S1_x_at11/112+12146389..12147621BTB/POZ domain containing protein
LOC_Os02g20609OsAffx.5031.3.S1_x_at1/112+12152903..12153193NA
LOC_Os02g20620OsAffx.24347.1.S1_at11/112+12153841..12154626MATH domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17961.1.S1_a_at--65--7391Chr02:12128378..12128402 (25 bp)
GTGAGCCTGCTCTCGTATTGATGAG
LOC_Os02g20560
Os.17961.1.S1_a_at--779--691Chr02:12128358..12128382 (25 bp)
ATGAGCAGGCATGCATGCGATGCAG
LOC_Os02g20560
Os.17961.1.S1_a_at--685--6331Chr02:12128340..12128364 (25 bp)
GATGCAGGCGATGCACATATCGTTA
LOC_Os02g20560
Os.17961.1.S1_a_at--65--191Chr02:12128315..12128339 (25 bp)
ATTTACATTGGGTTTTTGCTCGATA
LOC_Os02g20560
Os.17961.1.S1_a_at--495--10711Chr02:12128300..12128324 (25 bp)
TTGCTCGATATATGCTACGCACAAG
LOC_Os02g20560
Os.17961.1.S1_a_at--187--271Chr02:12128291..12128315 (25 bp)
ATATGCTACGCACAAGCACGCTCCA
LOC_Os02g20560
Os.17961.1.S1_a_at--594--4791Chr02:12128272..12128296 (25 bp)
GCTCCATTTCGCTCTGTTAATATGT
LOC_Os02g20560
Os.17961.1.S1_a_at--215--10191Chr02:12128211..12128235 (25 bp)
TATACCTTGTGAATGCATGTTTTAC
LOC_Os02g20560
Os.17961.1.S1_a_at--1157--10431Chr02:12128190..12128214 (25 bp)
TTACATTCCAAGTTACTGCACCGAT
LOC_Os02g20560
Os.17961.1.S1_a_at--364--3851Chr02:12128175..12128199 (25 bp)
CTGCACCGATGTAGTTTTATAATTT
LOC_Os02g20560
Os.17961.1.S1_a_at--970--9871Chr02:12128151..12128175 (25 bp)
TACATATACGCTCAACTTTAATTCG
LOC_Os02g20560
Target Sequence 
GTGAGCCTGCTCTCGTATTGATGAGCAGGCATGCATGCGATGCAGGCGATGCACATATCGTTAATTTACATTGGGTTTTT
GCTCGATATATGCTACGCACAAGCACGCTCCATTTCGCTCTGTTAATATGTTGTGTACAAACAACATTGCATTTTGTTTA
TCAGATGTATACCTTGTGAATGCATGTTTTACATTCCAAGTTACTGCACCGATGTAGTTTTATAATTTACATATACGCTC
AACTTTAATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17961.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis