Browse Element(s) Details


Os.17963.1.S1_at

Description gb:C98108
DB_XREF= gi:3760854
DB_XREF=C98108
CLONE=C0716_10Z
TID=Os.17963.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17963 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_187914.1 (A.thaliana) hemolysin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3964011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39602OsAffx.23890.2.S1_x_at11/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.2.S1_at10/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.4.S1_x_at5/113+21950620..21952648hypothetical protein
LOC_Os03g39610Os.12296.1.S1_at8/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39610Os.28216.3.S1_x_at1/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39620OsAffx.23962.2.S1_at11/113+21962978..21963847hypothetical protein
LOC_Os03g39629OsAffx.25439.1.S1_at11/113+21965707..21966173hypothetical protein
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39650OsAffx.3449.1.S1_at11/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39650Os.47994.1.S1_x_at1/113+22003097..22007169Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17963.1.S1_at--141--1171Chr03:21972152..21972176 (25 bp)
AGTCACCACGGAGCTGGAAGGTTTT
LOC_Os03g39640
Os.17963.1.S1_at--794--5211Chr03:21972127..21972151 (25 bp)
GAATTCACAGTCGATGGTGGCCGGC
LOC_Os03g39640
Os.17963.1.S1_at--840--2831Chr03:21972094..21972118 (25 bp)
AAGTAAGGTAGCAGCAGCCATGTCA
LOC_Os03g39640
Os.17963.1.S1_at--796--751Chr03:21972075..21972099 (25 bp)
ATGTCACGCAGAGGCCTGCATGGAT
LOC_Os03g39640
Os.17963.1.S1_at--879--3831Chr03:21972060..21972084 (25 bp)
CTGCATGGATACAACAGCTCCGGAT
LOC_Os03g39640
Os.17963.1.S1_at--114--8511Chr03:21972036..21972060 (25 bp)
TGGAAGAACCATTTCACCGGCACTT
LOC_Os03g39640
Os.17963.1.S1_at--84--7651Chr03:21971946..21971970 (25 bp)
GGGAGCATCTGGATGAGCCTCTCCT
LOC_Os03g39640
Os.17963.1.S1_at--711--3811Chr03:21971822..21971846 (25 bp)
CTCCTCGGACGATGATTGGCCAAAA
LOC_Os03g39640
Os.17963.1.S1_at--927--10251Chr03:21971760..21971784 (25 bp)
TTTGAGTTTCCGTTTGTCTGGCTAC
LOC_Os03g39640
Os.17963.1.S1_at--234--9891Chr03:21971738..21971762 (25 bp)
TACTTTGCCGTATGTGCTTTGGTGG
LOC_Os03g39640
Os.17963.1.S1_at--460--10831Chr03:21971609..21971633 (25 bp)
TTGTGGTCGTGCTGCAACTTGTTTC
LOC_Os03g39640
Target Sequence 
AGTCACCACGGAGCTGGAAGGTTTTGAATTCACAGTCGATGGTGGCCGGCATGACCGGAAGTAAGGTAGCAGCAGCCATG
TCACGCAGAGGCCTGCATGGATACAACAGCTCCGGATGGAAGAACCATTTCACCGGCACTTCCCTCGGAGCAGCCGTGGC
TACGACGACGGCCGCAGCGCCACTGTGGGAGCGGTCGGAGCGGGGAGGGAGCATCTGGATGAGCCTCTCCTCCCGCTCCT
CCTTGATCCTCTCCAGCTCCCTGAACCTNTGCTGCAGCAGCGCGATGGAGGAGAACATGACGGCGCCGTCGTTGCTCTGC
ATCCCCATCTCTCCTCGGACGATGATTGGCCAAAAACAACTGTATGATCAAAGGAACTCACTCTCTCCTCTCTTTGAGTT
TCCGTTTGTCTGGCTACTTTGCCGTATGTGCTTTGGTGGTGGGGGTTCTGTTGTTTGAGGGGGGGTAGTAGTGGTAGTGG
TAGTGTAGTGGGCATGTGCCTATTTATAAGCAGCAAGTTTTTGTCTTGGGGCAGNATTGTCGTCTTGTGGTCGTGCTGCA
ACTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis