Browse Element(s) Details


Os.17975.1.S1_x_at

Description gb:AK060688.1
DB_XREF= gi:32970706
TID=Os.17975.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A05, full insert sequence.
FL= gb:AK060688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3909011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39070OsAffx.4024.1.S1_at11/114+23000985..23002817F-box domain containing protein
LOC_Os04g39080Os.10790.1.A1_at11/114+23007093..23009134F-box domain containing protein, expressed
LOC_Os04g39090Os.17975.1.S1_x_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39090Os.17975.2.S1_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39100OsAffx.26383.1.S1_at11/114+23016909..23018081Peroxidase 65 precursor, putative, expressed
LOC_Os04g39110Os.46435.1.S1_s_at11/114+23023196..23024086Gibberellin regulated protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17975.1.S1_x_at--267--5971Chr04:23013894..23013918 (25 bp)
GAGAAGTATGTCTTCCTCTTCCATG
LOC_Os04g39090
Os.17975.1.S1_x_at--367--8431Chr04:23015416..23015440 (25 bp)
TGGCACCTTATTCAAAACGGCGTAG
LOC_Os04g39090
Os.17975.1.S1_x_at--535--10151Chr04:23015523..23015547 (25 bp)
TATCCCAATGGTCTAGTGCTCTAGT
LOC_Os04g39090
Os.17975.1.S1_x_at--80--10071Chr04:23015536..23015560 (25 bp)
TAGTGCTCTAGTCAATCCGTTTCAT
LOC_Os04g39090
Os.17975.1.S1_x_at--204--10051Chr04:23015567..23015591 (25 bp)
TAGATCAACGCATCGCTTTTCTTGG
LOC_Os04g39090
Os.17975.1.S1_x_at--185--1611Chr04:23015612..23015636 (25 bp)
AGCTGATGATCCCAATCCTGTTATT
LOC_Os04g39090
Os.17975.1.S1_x_at--623--9171Chr04:23015644..23015668 (25 bp)
TGCCCCTTGTGTAGCAGGATCTGAA
LOC_Os04g39090
Os.17975.1.S1_x_at--1136--6931Chr04:23015679..23015703 (25 bp)
GTAGCTTTGCTACACTAACCAGTCA
LOC_Os04g39090
Os.17975.1.S1_x_at--13--9811Chr04:23015694..23015718 (25 bp)
TAACCAGTCAGTTTTTTCTTCCTCT
LOC_Os04g39090
Os.17975.1.S1_x_at--552--5831Chr04:23015740..23015764 (25 bp)
GACCTGTAATCGAAATCCCATGCTT
LOC_Os04g39090
Os.17975.1.S1_x_at--507--10131Chr04:23015765..23015789 (25 bp)
TATGACCTTGGGAGCGTTGGCAATT
LOC_Os04g39090
Target Sequence 
GAGAAGTATGTCTTCCTCTTCCATGCTGAANGAGGTGGATATGGCTNCATTGAGTCAGATGGGAGACAGTGACCTGNAAG
GAAATAGGGGTACCAATGGGNTCCTAGAAAGAAGATTCTCCNAGGCAGTGGCACCTTATTCAAAACGGCGTAGATGNAAC
AGCATGCTCAGGAACTTGGGGCGTTCNTGGGCAATGACAATTTATTGGTGTAAGCTGCTTCATTGCAGATCTTGTATATC
CCAATGGTCTAGTGCTCTAGTCAATCCGTTTCATTGCTGATAGATCAACGCATCGCTTTTCTTGGCATGCATAATCTTAT
CTGTCAGCTGATGATCCCAATCCTGTTATTCACGACCTGCCCCTTGTGTAGCAGGATCTGAAACATGGATATGTAGCTTT
GCTACACTAACCAGTCAGTTTTTTCTTCCTCTTTGGGAATTGGGAACATCGATGACCTGTAATCGAAATCCCATGCTTTA
TGACCTTGGGAGCGTTGGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17975.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis