Browse Element(s) Details


Os.17977.1.S1_s_at

Description gb:AK066982.1
DB_XREF= gi:32977000
TID=Os.17977.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093I07, full insert sequence.
FL= gb:AK066982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4830010/11Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48270Os.15665.1.S1_at11/117+28830923..28833032Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17977.1.S1_s_at--1033--7951Chr07:28859269..28859293 (25 bp)
GGATCACTTGATGGGCAGCAAAGGT
LOC_Os07g48300
Os.17977.1.S1_s_at--749--2391Chr07:28859216..28859240 (25 bp)
AAACTTCGAAGCAATCCTGCGGAGA
LOC_Os07g48300
Os.17977.1.S1_s_at--354--6091Chr07:28859016..28859040 (25 bp)
GAGTACGTCATTTGCAATGGTTGCA
LOC_Os07g48300
Os.17977.1.S1_s_at--144--6671Chr07:28858997..28859021 (25 bp)
GTTGCAAAAGCCCTGATACCATTCT
LOC_Os07g48300
Os.17977.1.S1_s_at--691--5511Chr07:28858965..28858989 (25 bp)
GAAAATCGTCTGTTCTTCCTTCGCT
LOC_Os07g48300
Os.17977.1.S1_s_at--975--10631NONE
TTCGCTGCGAACAGTGTGGATCGTC
NONE
Os.17977.1.S1_s_at--592--6151Chr07:28858083..28858107 (25 bp)
GAGGTCTGTTGCTCCAATCAAGGCT
LOC_Os07g48300
Os.17977.1.S1_s_at--431--371Chr07:28858067..28858091 (25 bp)
ATCAAGGCTGGATTTGTCGCACAAG
LOC_Os07g48300
Os.17977.1.S1_s_at--1129--4671Chr07:28858035..28858059 (25 bp)
GCGGAAGGCCTGAACATAAGTCGAA
LOC_Os07g48300
Os.17977.1.S1_s_at--166--7951Chr07:28858005..28858029 (25 bp)
GGATTTGTCTATTCAGTGAGCTGCT
LOC_Os07g48300
Os.17977.1.S1_s_at--135--7491Chr07:28857940..28857964 (25 bp)
GTGTGGCCAGTTTTGGACCTAGTTT
LOC_Os07g48300
Target Sequence 
GGATCACTTGATGGGCAGCAAAGGTTGGTGATCAAAGGAAGATTTGCTCCGAAAAACTTCGAAGCAATCCTGCGGAGATA
TATCAATGAGTACGTCATTTGCAATGGTTGCAAAAGCCCTGATACCATTCTATCCAAGGAAAATCGTCTGTTCTTCCTTC
GCTGCGAACAGTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAGTTGGTCGGCGGAAGGCC
TGAACATAAGTCGAAGCTTTGGATTTGTCTATTCAGTGAGCTGCTATATTGTGTGAGAAATGATTTTGCTCTATCTTGTA
CTCTTGTGTGGCCAGTTTTGGACCTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17977.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis