Browse Element(s) Details


Os.17997.2.S1_x_at

Description gb:NM_196416.1
DB_XREF= gi:37534191
TID=Os.17997.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17997 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative pyrophosphate--fructose-6-phosphate 1-phosphotransferase (OSJNBa0060A14.6), mRNA.
PROD=putative pyrophosphate--fructose-6-phosphate1-phosphotransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2657011/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26590OsAffx.6775.1.S1_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26590OsAffx.6775.1.S1_x_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26600Os.5819.1.S1_at11/1110+13535705..13537787Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17997.2.S1_x_at--197--8251Chr10:13518959..13518983 (25 bp)
GGCACATTCTGCATTTCATGGCATT
LOC_Os10g26570
Os.17997.2.S1_x_at--494--9071Chr10:13518887..13518911 (25 bp)
TGCTTCCCTGTCTAGTGGCCAAGTA
LOC_Os10g26570
Os.17997.2.S1_x_at--554--6511Chr10:13518863..13518886 (24 bp)
GATATCTGCCTGATACCTGAGGTAC
LOC_Os10g26570
Os.17997.2.S1_x_at--1051--9951Chr10:13518759..13518783 (25 bp)
TACCGTTCACTCTTGATGGGCCAAA
LOC_Os10g26570
Os.17997.2.S1_x_at--396--8551Chr10:13518734..13518758 (25 bp)
TGGAGTTCTTCAACACCTTGAGCAC
LOC_Os10g26570
Os.17997.2.S1_x_at--87--711Chr10:13518401..13518425 (25 bp)
ATGATCCTTGGTGATATCGGCGTGC
LOC_Os10g26570
Os.17997.2.S1_x_at--795--491Chr10:13518387..13518410 (24 bp)
ATCGGCGTGCACCTTCATCAGAAGA
LOC_Os10g26570
Os.17997.2.S1_x_at--744--10771Chr10:13518227..13518251 (25 bp)
TTGATCCTACATACATGGTCCGTGC
LOC_Os10g26570
Os.17997.2.S1_x_at--685--10531Chr10:13518036..13518060 (25 bp)
TTCAGTGGCATCACAACCGGCATAT
LOC_Os10g26570
Os.17997.2.S1_x_at--555--3251Chr10:13518001..13518025 (25 bp)
CAACGTCTACTTGCCAATCTCAGAA
LOC_Os10g26570
Os.17997.2.S1_x_at--845--2851Chr10:13517970..13517994 (25 bp)
AAGTCCACAAGGTTCGTCGATCCAA
LOC_Os10g26570
Target Sequence 
GGCACATTCTGCATTTCATGGCATTGGATTGGTCAAGCTGATGGGAAGAAGCAGTGGCTTTATCACAATGCATGCTTCCC
TGTCTAGTGGCCAAGTAGATATCTGCCTGATACCTGAGGTACCGTTCACTCTTGATGGGCCAAATGGAGTTCTTCAACAC
CTTGAGCACTTGATAGAAACCAAGGGATTTGCTCTGATTTGTGTAGCCGAAGGAGCGGGACAGGAACATCTGCAACAGTC
AAACGCAACTGATGCATCAGGGAACATGATCCTTGGTGATATCGGCGTGCACCTTCATCAGAAGATCAAGGCCCATTTCA
AGGAAATAGGAGTACATTCTGATGTGAAGTACATTGATCCTACATACATGGTCCGTGCTGTGCGTGCCAATGCATCCGAT
GCCATCCTATGCACTGTGCTTGGTCAGAATGCTGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATG
CAACACGCACAACGTCTACTTGCCAATCTCAGAAGTCATCAAGTCCACAAGGTTCGTCGATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17997.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis