Browse Element(s) Details


Os.18122.1.S1_at

Description gb:AK063978.1
DB_XREF= gi:32973996
TID=Os.18122.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C08, full insert sequence.
FL= gb:AK063978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0779011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07750Os.53989.1.S1_at11/113+3915792..3919929expressed protein
LOC_Os03g07760OsAffx.16463.2.S1_at11/113+3921220..3922075hypothetical protein
LOC_Os03g07770NANA3+3923909..3930063transposon protein, putative, unclassified
LOC_Os03g07780NANA3+3930706..3933929transposon protein, putative, unclassified
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07800Os.49223.1.S1_at11/113+3949327..3953619RNA recognition motif family protein, expressed
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18122.1.S1_at--631--8211Chr03:3944802..3944826 (25 bp)
GGAATCTGCAGATGACGCTTCCCTG
LOC_Os03g07790
Os.18122.1.S1_at--523--3511Chr03:3944831..3944855 (25 bp)
CATGTGTACCATGCCAGCTGTGTAA
LOC_Os03g07790
Os.18122.1.S1_at--288--2231Chr03:3944963..3944984 (22 bp)
ACAAGGTTTGCCCTGTTTGCTTTGC
LOC_Os03g07790
Os.18122.1.S1_at--645--3671Chr03:3944979..3945003 (25 bp)
CTTTGCTGAGGTTCCTGGTGACGAA
LOC_Os03g07790
Os.18122.1.S1_at--338--1251Chr03:3945167..3945191 (25 bp)
AGTTGGATCTTGGAACCTGTTCTGA
LOC_Os03g07790
Os.18122.1.S1_at--697--991Chr03:3945193..3945217 (25 bp)
AGGTTTGCCGTAGACTGTAGAGTTC
LOC_Os03g07790
Os.18122.1.S1_at--375--5331Chr03:3945224..3945248 (25 bp)
GAAGTGTAACCCTGTGCTAGATGAA
LOC_Os03g07790
Os.18122.1.S1_at--114--671Chr03:3945244..3945268 (25 bp)
ATGAAGCATGCTGGATCACGCGCGC
LOC_Os03g07790
Os.18122.1.S1_at--215--10711Chr03:3945269..3945293 (25 bp)
TTGCGAGGTGTTTTTGTCCACTGCA
LOC_Os03g07790
Os.18122.1.S1_at--421--2251Chr03:3945351..3945375 (25 bp)
AAATTCATTTGTTACATCCCCTGCT
LOC_Os03g07790
Os.18122.1.S1_at--666--8731Chr03:3945383..3945407 (25 bp)
TGTCAATCACAGTATGTCCCCTGTT
LOC_Os03g07790
Target Sequence 
GGAATCTGCAGATGACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTT
TGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCC
AGACTCAGCCCACACTGTNACCCCNNAACGGATNGCATGNNTTNTNNTNNNNNGNAGNNNNNNCNTTTCNCNCTNNNNTT
GTGTATTAGAATCATATCGCAAATATAGGTTATAACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGT
AGACTGTAGAGTTCGAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTTTTT
GTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTGTGGACAGAAAAAATTCATTTGTT
ACATCCCCTGCTTTTAGCCTGTCAATCACAGTATGTCCCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis