Browse Element(s) Details


Os.18128.1.S1_a_at

Description gb:AK064666.1
DB_XREF= gi:32974684
TID=Os.18128.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144D11.30 (B1144D11.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B10, full insert sequence.
FL= gb:AK064666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3785011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed
LOC_Os01g37880NANA1+21534444..21537679transposon protein, putative, unclassified
LOC_Os01g37890NANA1+21538313..21544468transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18128.1.S1_a_at--867--6491Chr01:21512830..21512854 (25 bp)
GATTTGTCATCACCGATGGTCGTAG
LOC_Os01g37850
Os.18128.1.S1_a_at--795--4771Chr01:21513588..21513612 (25 bp)
GCTGCCCTAGCATGTTTATTCTCAA
LOC_Os01g37850
Os.18128.1.S1_a_at--384--2291Chr01:21513615..21513639 (25 bp)
AAAGGATTACTTCACTCCTGGAAGA
LOC_Os01g37850
Os.18128.1.S1_a_at--445--8671Chr01:21513646..21513670 (25 bp)
TGTGGTATTCATTCTATGTCAGCAT
LOC_Os01g37850
Os.18128.1.S1_a_at--78--771Chr01:21513661..21513685 (25 bp)
ATGTCAGCATACTAGTAGCCCTCTT
LOC_Os01g37850
Os.18128.1.S1_a_at--832--3751Chr01:21513681..21513705 (25 bp)
CTCTTCTGGACATACTACCTCTTGA
LOC_Os01g37850
Os.18128.1.S1_a_at--1104--10231Chr01:21513903..21514022 (25 bp)
TTTGGCCCTTTGATTGCTTCTGCAT
LOC_Os01g37850
Os.18128.1.S1_a_at--708--4931Chr01:21514019..21514043 (25 bp)
GCATTGAGCCTCTATGTGGACCACT
LOC_Os01g37850
Os.18128.1.S1_a_at--1103--7511Chr01:21514034..21514058 (25 bp)
GTGGACCACTCTATGCTGGAGTCAA
LOC_Os01g37850
Os.18128.1.S1_a_at--713--9311Chr01:21514170..21514194 (25 bp)
TCCCGGTATAGCTTAGAGTTCATCT
LOC_Os01g37850
Os.18128.1.S1_a_at--272--6071Chr01:21514185..21514209 (25 bp)
GAGTTCATCTACTTCTAGTTTACTG
LOC_Os01g37850
Target Sequence 
GATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCA
CTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGT
TACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCAC
TCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATA
TGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAG
TTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18128.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis