Browse Element(s) Details


Os.18151.1.S1_at

Description gb:AK064066.1
DB_XREF= gi:32974084
TID=Os.18151.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-G04, full insert sequence.
FL= gb:AK064066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1172011/11expressed protein
LOC_Os08g112209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11680NANA8+6840727..6841713transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g11690NANA8+6843168..6843818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g11700OsAffx.29149.1.S1_at10/118+6848567..6849275hypothetical protein
LOC_Os08g11720Os.18151.1.S1_at11/118+6860093..6865243expressed protein
LOC_Os08g11720Os.16492.1.S1_at10/118+6860093..6865243expressed protein
LOC_Os08g11720Os.50541.1.S1_at1/118+6860093..6865243expressed protein
LOC_Os08g11730NANA8+6874285..6874545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11740OsAffx.31869.1.S1_at8/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.5.S1_x_at6/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_x_at2/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_at1/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11760Os.52096.1.S1_at11/118+6884757..6887329expressed protein
LOC_Os08g11760Os.46610.1.S1_x_at7/118+6884757..6887329expressed protein
LOC_Os08g11760Os.52049.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_x_at1/118+6884757..6887329expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18151.1.S1_at--1108--5214Chr08:6594432..6594456 (25 bp)
GAATTTTCTGTGGATATTCCGAATT
LOC_Os08g11220
Os.18151.1.S1_at--687--10772Chr08:6594481..6594505 (25 bp)
TTGTTACCCTGATTTTCTTTTCCTG
LOC_Os08g11220
Os.18151.1.S1_at--266--6552Chr08:6594491..6594515 (25 bp)
GATTTTCTTTTCCTGCTCATTAGTT
LOC_Os08g11220
Os.18151.1.S1_at--226--10332Chr08:6594524..6594548 (25 bp)
TTTCATTTTTTATCACGCTACGCAT
LOC_Os08g11220
Os.18151.1.S1_at--1021--1834Chr08:6594543..6594567 (25 bp)
ACGCATTTTAAACCCTAGCAGCTAG
LOC_Os08g11220
Os.18151.1.S1_at--1113--3674Chr08:6594557..6594581 (25 bp)
CTAGCAGCTAGCATTTTCAAAGGAA
LOC_Os08g11220
Os.18151.1.S1_at--980--6012Chr08:6594584..6594608 (25 bp)
GAGAGTGGAATTTCCCCTCGTGGGA
LOC_Os08g11220
Os.18151.1.S1_at--736--7472Chr08:6594603..6594627 (25 bp)
GTGGGATTCCTTTCCAAATGAACGC
LOC_Os08g11220
Os.18151.1.S1_at--1070--2592Chr08:6594623..6594647 (25 bp)
AACGCAGAGCAACTTCCCTAGGGAA
LOC_Os08g11220
Os.18151.1.S1_at--505--8011Chr08:6862482..6862506 (25 bp)
GGAGGGAGTTCATATGTCACACGGA
LOC_Os08g11720
Os.18151.1.S1_at--1027--731Chr08:6862469..6862493 (25 bp)
ATGTCACACGGAAAATCCCCTTGGG
LOC_Os08g11720
Target Sequence 
GAATTTTCTGTGGATATTCCGAATTCTGTATGAATTTTTTGAATTTATTTTGTTACCCTGATTTTCTTTTCCTGCTCATT
AGTTATTGTGAGTTTCATTTTTTATCACGCTACGCATTTTAAACCCTAGCAGCTAGCATTTTCAAAGGAAAGGAGAGTGG
AATTTCCCCTCGTGGGATTCCTTTCCAAATGAACGCAGAGCAACTTCCCTAGGGAAGGGAGGGAGTTCATATGTCACACG
GAAAATCCCCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis