Browse Element(s) Details


Os.18152.1.S1_at

Description gb:AK067130.1
DB_XREF= gi:32977148
TID=Os.18152.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098N20, full insert sequence.
FL= gb:AK067130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5872010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58690Os.18604.1.S1_at11/113+33360594..33361872expressed protein
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed
LOC_Os03g58710Os.14346.1.S1_at11/113+33372162..33375649riboflavin biosynthesis protein, putative, expressed
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g58740Os.27800.1.A1_at11/113+33392339..33395809expressed protein
LOC_Os03g58750NANA3+33398391..33399860protein kinase family protein, putative, expressed
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18152.1.S1_at--1081--2211Chr03:33383254..33383278 (25 bp)
AACAAGGGAACCACCGCGTTGGATG
LOC_Os03g58720
Os.18152.1.S1_at--187--2811Chr03:33383288..33383312 (25 bp)
AAGATGCAACACCAACCGCTGATAG
LOC_Os03g58720
Os.18152.1.S1_at--1105--351Chr03:33383426..33383450 (25 bp)
ATAATCCGGCAGATGCCCTGGCAAA
LOC_Os03g58720
Os.18152.1.S1_at--848--531Chr03:33383547..33383571 (25 bp)
ATCGCTGGTGGAGCAATATCGTTCC
LOC_Os03g58720
Os.18152.1.S1_at--602--8611Chr03:33383641..33383665 (25 bp)
TGGTGACCCGGACCAGCTTGTCAAA
LOC_Os03g58720
Os.18152.1.S1_at--177--952Chr03:33383682..33383706 (25 bp)
AGAGAACTTTCCACAAACTTTGCAG
LOC_Os03g58720
Os.18152.1.S1_at--740--10251Chr03:33383753..33383777 (25 bp)
TTTGTCCCACTCTTGTCGATCTTGA
LOC_Os03g58720
Os.18152.1.S1_at--867--10751Chr03:33383774..33383798 (25 bp)
TTGACCCTTGATGACAGTGGCTGAT
LOC_Os03g58720
Os.18152.1.S1_at--1016--8071Chr03:33383806..33383830 (25 bp)
GGAGCCATCTATTATGACCATTTGA
LOC_Os03g58720
Os.18152.1.S1_at--954--1311NONE
AGATGGTACGATGTGTGCTGCTTCC
NONE
Os.18152.1.S1_at--619--9072Chr03:34569502..34569526 (25 bp)
TGCTTCCTGTGATTGGCCTGTCCAT
NONE
Target Sequence 
AACAAGGGAACCACCGCGTTGGATGGAGATAGACAAGATGCAACACCAACCGCTGATAGGAATCGAACTCTGTCGAGTAA
ACATAATCCGGCAGATGCCCTGGCAAAGAGGAAAAACAGAAATGATAGTCATTCGGAGCAAAAGAGAGGAAGGGCTCAAA
GAAAGACCAAGAAAGAGCTGGCNGGGGAAGGAAGCGTGGATAAATCGCTGGTGGAGCAATATCGTTCCAAATTTTTGCAA
CATGGTCTGAACAAAACCAAAGGATAATTGAGTGTGATCATCGTGGGGAGAACAACATGGTGACCCGGACCAGCTTGTCA
AAAGGCTAAAATGTTTCCAGAGAACTTTCCACAAACTTTGCAGCCCCACCATTGGTCTGCCAAAATTTTGCTTGCTACAT
TTTGGTTGTTTTGTCCCACTCTTGTCGATCTTGACCCTTGATGACAGTGGCTGATGGTCGTTGGAGCCATCTATTATGAC
CATTTGAATGGGAATGCTTATGTNTACANAAACGCGCTAGTTTAAGATGGTACGATGTGTGCTGCTTCCTGTGATTGGCC
TGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis