Browse Element(s) Details


Os.4782.1.S1_at

Description gb:AK111769.1
DB_XREF= gi:37988432
TID=Os.4782.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023071D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023071D17, full insert sequence.
FL= gb:AK111769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g587642/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g58740Os.27800.1.A1_at11/113+33392339..33395809expressed protein
LOC_Os03g58750NANA3+33398391..33399860protein kinase family protein, putative, expressed
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4782.1.S1_at--955--131Chr03:33410566..33410590 (25 bp)
ATTACCACACGCTGCTTTCTTTCTC
LOC_Os03g58764
Os.4782.1.S1_at--547--10051Chr03:33410619..33410643 (25 bp)
TAGTTCGCAACTCGCATCTGCTTTC
LOC_Os03g58764
Os.4782.1.S1_at--30--7111Chr03:33410995..33411019 (25 bp)
GTCAGCTAAGGATGCATCCATCGAT
NONE
Os.4782.1.S1_at--1152--4451Chr03:33411032..33411056 (25 bp)
GCCTCAGGTCGCATCTATTGTACAG
NONE
Os.4782.1.S1_at--647--7231Chr03:33411039..33411063 (25 bp)
GTCGCATCTATTGTACAGACACGGC
NONE
Os.4782.1.S1_at--666--10771Chr03:33411072..33411096 (25 bp)
TTGATCCTCAAGTCCTCATCAAGGA
NONE
Os.4782.1.S1_at--261--3451Chr03:33411099..33411123 (25 bp)
CAGTATTAATCTGCTTCTCGAATTG
NONE
Os.4782.1.S1_at--193--9511Chr03:33411114..33411138 (25 bp)
TCTCGAATTGTTTTATGCCAGCTTA
NONE
Os.4782.1.S1_at--978--9191Chr03:33411129..33411153 (25 bp)
TGCCAGCTTATTGCTTACAGCTGCT
NONE
Os.4782.1.S1_at--767--9111Chr03:33411150..33411174 (25 bp)
TGCTGCTGCTTCCTATATATATATG
NONE
Os.4782.1.S1_at--71--7011Chr03:33411174..33411198 (25 bp)
GTACTGTGTCCTATCAGTGTGATTA
NONE
Target Sequence 
ATTACCACACGCTGCTTTCTTTCTCTTCTTCTTCCTCATCGCGTCACCTCCTCTAGTTCGCAACTCGCATCTGCTTTCTT
TTGAGTTGGTGTTCGTAGTAAGAGGAGGAAGCTGAAGATGAGCGATCCCAAGTACGCGTACCCTTACCCGGCGCAGGGCT
ACTACCAGGGCCCGTACCAGGGGCCTCCGGTGATGGCGCCGCCGCAGTACGCCGCGCCGCCGCCCAGGCGGNAGCCTNAG
TTTCCTCGAAGGCTGTTTGGCTGCGCTTTGTTGCTGCTGCTTGATCGACGAGTGCTGCTGCGACCCGTCGATTATATTCG
TCAGCTAAGGATGCATCCATCGATCGACCTGGCTTNGGCCTCAGGTCGCATCTATTGTACAGACACGGCAGCACGGCTTG
ATCCTCAAGTCCTCATCAAGGATGCAGTATTAATCTGCTTCTCGAATTGTTTTATGCCAGCTTATTGCTTACAGCTGCTG
CTGCTTCCTATATATATATGTACTGTGTCCTATCAGTGTGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis