Browse Element(s) Details


Os.10884.1.S1_at

Description gb:AK070731.1
DB_XREF= gi:32980754
TID=Os.10884.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061A01, full insert sequence.
FL= gb:AK104696.1 gb:AK070731.1 gb:AK099212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5879011/11ATPase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58750NANA3+33398391..33399860protein kinase family protein, putative, expressed
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10884.1.S1_at--960--10531Chr03:33422603..33422627 (25 bp)
TTCTTGGCCAAGACATACCTCGACG
LOC_Os03g58790
Os.10884.1.S1_at--244--1371Chr03:33422718..33422742 (25 bp)
AGAGCTTGGACGACAATGCCGACAC
LOC_Os03g58790
Os.10884.1.S1_at--636--2171Chr03:33422739..33422763 (25 bp)
ACACGTGCCTCGCAGCATTAGTGAA
LOC_Os03g58790
Os.10884.1.S1_at--793--7951Chr03:33422872..33422896 (25 bp)
GGATAAGTAGCTAGCCGCCATTGGC
LOC_Os03g58790
Os.10884.1.S1_at--997--4311Chr03:33422889..33422913 (25 bp)
CCATTGGCGCCTTGCTGGAGTGGTT
LOC_Os03g58790
Os.10884.1.S1_at--902--4711Chr03:33422902..33422926 (25 bp)
GCTGGAGTGGTTGCTAGCTTCTCGT
LOC_Os03g58790
Os.10884.1.S1_at--190--9991Chr03:33422916..33422940 (25 bp)
TAGCTTCTCGTTTTTTCTAGTCCAC
LOC_Os03g58790
Os.10884.1.S1_at--1132--1111Chr03:33422934..33422958 (25 bp)
AGTCCACGTAGCTTATGATCACAGT
LOC_Os03g58790
Os.10884.1.S1_at--589--8211Chr03:33422997..33423021 (25 bp)
GGAATAATTTGACCACATGTTGTGC
LOC_Os03g58790
Os.10884.1.S1_at--736--5711Chr03:33423032..33423056 (25 bp)
GACTCGATTTTCTTAGTGAACTGAC
LOC_Os03g58790
Os.10884.1.S1_at--73--7371Chr03:33423047..33423071 (25 bp)
GTGAACTGACAATCTGCTTAATTTG
LOC_Os03g58790
Target Sequence 
TTCTTGGCCAAGACATACCTCGACGTCGACTCCCACCGCCTGTTCGCCGCCGTCGACGAGCTCCTGTCGGAGGTGGACAT
GACGCCGGCGGACGTCGCCGAGAACCTGACGCCCAAGAGCTTGGACGACAATGCCGACACGTGCCTCGCAGCATTAGTGA
AGGAGCTCGAGAAGGCCAAGGAGAATAAATCAAAAGGAAAAAATGCTCATGGCGAAGACAAAGACGAAGACGAAGACGAA
GAAGATGACGATGTAGAAGTGGTCGGGAAGGATAAGTAGCTAGCCGCCATTGGCGCCTTGCTGGAGTGGTTGCTAGCTTC
TCGTTTTTTCTAGTCCACGTAGCTTATGATCACAGTAATAGACTAAGTTTTTTTAAGAAAATTATTTTCATTGTGGAATA
ATTTGACCACATGTTGTGCTAAATAATTTGACTCGATTTTCTTAGTGAACTGACAATCTGCTTAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis