Browse Element(s) Details


Os.33544.1.S1_at

Description gb:AK100177.1
DB_XREF= gi:32985386
TID=Os.33544.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029J10, full insert sequence.
FL= gb:AK100177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5883010/11bHLH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33544.1.S1_at--1029--991Chr03:33441131..33441155 (25 bp)
AGGATCTTGTCCCTGGATGCAACAA
LOC_Os03g58830
Os.33544.1.S1_at--612--10191Chr03:33440930..33440954 (25 bp)
TATATCCAGGCTTTGCAACGGCAAG
LOC_Os03g58830
Os.33544.1.S1_at--313--9211NONE
TCGAAGCATTTCCACCCAAAGATTT
NONE
Os.33544.1.S1_at--775--7771Chr03:33440216..33440240 (25 bp)
GGTGCTCAGGTATACAACACGGCTC
LOC_Os03g58830
Os.33544.1.S1_at--4--2191Chr03:33440200..33440224 (25 bp)
ACACGGCTCCTGGATTGACGTTTGA
LOC_Os03g58830
Os.33544.1.S1_at--946--491Chr03:33440136..33440160 (25 bp)
ATCGGAATGGCTCCACATGCAGATT
LOC_Os03g58830
Os.33544.1.S1_at--749--2291Chr03:33440080..33440104 (25 bp)
AACAAAGTCAGGATGGTGGCCCAAA
LOC_Os03g58830
Os.33544.1.S1_at--363--6071Chr03:33440041..33440065 (25 bp)
GAGTTCAGTCAGAAACCACGGCTTT
LOC_Os03g58830
Os.33544.1.S1_at--188--6991Chr03:33439920..33439944 (25 bp)
GTACCGGGATACAATTCTCATCAGA
LOC_Os03g58830
Os.33544.1.S1_at--156--71Chr03:33439888..33439912 (25 bp)
ATTCCACGGAATTTCGGCAGGTCAC
LOC_Os03g58830
Os.33544.1.S1_at--299--1031Chr03:33439870..33439894 (25 bp)
AGGTCACGCTCATTCGTAGCATGAA
LOC_Os03g58830
Target Sequence 
AGGATCTTGTCCCTGGATGCAACAAGGTTATTGGGAAAGCATCAGTACTTGATGAGATAATTAATTATATCCAGGCTTTG
CAACGGCAAGTTGAGTTTTTGTCCATGAAGCTTGAGGCTGTTAATGCTCATGTGAATAATGGAATCGAAGCATTTCCACC
CAAAGATTTTGGTGCTCAGGTATACAACACGGCTCCTGGATTGACGTTTGATCCACAAACACCAAGAGAATACGCCCAGG
GATCAACACCATCGGAATGGCTCCACATGCAGATTGGTGGCACCTATGAAAGAGTGACATGAACAGAACAAAGTCAGGAT
GGTGGCCCAAAATAAAGCATACCATGAGTTCAGTCAGAAACCACGGCTTTAGATTATTTTTCGAAACTCTCGTGCTCNAA
ATTCGATTTCATTCATAGCATGGAGCTCATGTATTTAGAGACTGCGAGCACAGTATTTTTACATCTGTACCGGGATACAA
TTCTCATCAGATTCATGTATTCCACGGAATTTCGGCAGGTCACGCTCATTCGTAGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis