Browse Element(s) Details


OsAffx.13543.1.S1_s_at

Description tigr:9631.m05790
TID=OsAffx.13543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unknow protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5885011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13543.1.S1_s_at--396--8331Chr03:33452162..33452186 (25 bp)
GGCGTCACGCCATGAACCGTAGTAT
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--748--10211Chr03:33452140..33452164 (25 bp)
TATTACTGAGAGCTACGTACGATCT
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--812--6991Chr03:33452124..33452148 (25 bp)
GTACGATCTCATGCATCTACGTGCG
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--28--10191Chr03:33452088..33452112 (25 bp)
TATACGCACGCGTGGTGCACGTGTA
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--537--1911Chr03:33452070..33452094 (25 bp)
ACGTGTAGTAGCTAGTGTCATCTTT
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--214--7131Chr03:33452054..33452078 (25 bp)
GTCATCTTTTGCTTTTGAGTGTCGA
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--425--451Chr03:33452030..33452054 (25 bp)
ATCTCAGGTGAGTTGCATGCATGGT
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--1022--2431Chr03:33451982..33452006 (25 bp)
AAAAGTTTGGGTTTGTGGCCTGATG
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--839--8451Chr03:33451967..33451991 (25 bp)
TGGCCTGATGGCAAGAGTCGAGTTT
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--99--6111Chr03:33451953..33451977 (25 bp)
GAGTCGAGTTTACTAGTAGCTTCTA
LOC_Os03g58850
OsAffx.13543.1.S1_s_at--706--9771Chr03:33451897..33451921 (25 bp)
TAAGTGCACGTGATGCATGCGAGAT
LOC_Os03g58850
Target Sequence 
GGCGTCACGCCATGAACCGTAGTATTACTGAGAGCTACGTACGATCTCATGCATCTACGTGCGCCGCGTGCGTATATACG
CACGCGTGGTGCACGTGTAGTAGCTAGTGTCATCTTTTGCTTTTGAGTGTCGATCTCAGGTGAGTTGCATGCATGGTTGG
GCAGGGAGGTTGGAGTTTGTAAAAGTTTGGGTTTGTGGCCTGATGGCAAGAGTCGAGTTTACTAGTAGCTTCTAGTAGTT
GTGTGCTAAGTTAATTGTGTGTTGTTAAGTGCACGTGATGCATGCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13543.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis