Browse Element(s) Details


Os.50961.1.S1_at

Description gb:AK059759.1
DB_XREF= gi:32969777
TID=Os.50961.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E11, full insert sequence.
FL= gb:AK059759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5889010/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein
LOC_Os03g58920Os.23190.1.A1_at11/113+33485397..33489986galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50961.1.S1_at--565--5731NONE
GACTGTATTTCCAAATGCTGCGGGA
NONE
Os.50961.1.S1_at--944--31Chr03:33462139..33462162 (24 bp)
ATTGTGCAAGATCTGGCCTGGCAGT
LOC_Os03g58890
Os.50961.1.S1_at--544--2951Chr03:33461978..33462002 (25 bp)
AAGGCGATGCGCTACTGTTCTTCAG
LOC_Os03g58890
Os.50961.1.S1_at--432--10571Chr03:33461961..33461985 (25 bp)
TTCTTCAGTCTCCATGTTAACGCGA
LOC_Os03g58890
Os.50961.1.S1_at--569--1931Chr03:33461934..33461958 (25 bp)
ACGGATCCAGCCAGTCTTCATGGAA
LOC_Os03g58890
Os.50961.1.S1_at--552--9731Chr03:33461845..33461869 (25 bp)
TAATCCTCCGGATGTAAGCCTGGAT
LOC_Os03g58890
Os.50961.1.S1_at--1131--3891Chr03:33461826..33461850 (25 bp)
CTGGATTTGCCGTGTTCCGATGAAA
LOC_Os03g58890
Os.50961.1.S1_at--500--10851Chr03:33461741..33461765 (25 bp)
TTGGCACCAAGGATTCGCTCGGATT
LOC_Os03g58890
Os.50961.1.S1_at--654--5091Chr03:33461677..33461701 (25 bp)
GCACCCGCCAAACTGAAGATCTGAA
LOC_Os03g58890
Os.50961.1.S1_at--137--10091Chr03:33461636..33461660 (25 bp)
TAGGCTGTTAGCTATTTTCGCCCAC
LOC_Os03g58890
Os.50961.1.S1_at--836--10631Chr03:33461620..33461644 (25 bp)
TTCGCCCACTTTACTTACACAGTTA
LOC_Os03g58890
Target Sequence 
GACTGTATTTCCAAATGCTGCGGGAAGGCATTTACAACTCAAGGATGAAACTTGGTCTGATTGTGCAAGATCTGGCCTGG
CAGTGAAGCCAAAGAAAGGCGATGCGCTACTGTTCTTCAGTCTCCATGTTAACGCGACAACGGATCCAGCCAGTCTTCAT
GGAAGCTGTCCGGTGATCGAAGGCGAGAAATGGTCTGCAACGAAATGGATCCATGTCAGATCATTTGATAATCCTCCGGA
TGTAAGCCTGGATTTGCCGTGTTCCGATGAAAACGAGCGCTGCACGAGATGGGCTGCTGTTGNAGAGTGTTACAGGAACC
CAAAATACATGGTTGGCACCAAGGATTCGCTCGGATTCTGCCGCAAGAGCTNCNNGNNNTGCGATGCTTAAACCCTGCAC
CCGCCAAACTGAAGATCTGAAAATCAAAGTGTCATGTTAGGCTGTTAGCTATTTTCGCCCACTTTACTTACACAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis