Browse Element(s) Details


Os.23190.1.A1_at

Description gb:CB650947
DB_XREF= gi:29645940
DB_XREF=OSJNEb15L03.r
CLONE=OSJNEb15L03
TID=Os.23190.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23190 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201068.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5892011/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein
LOC_Os03g58920Os.23190.1.A1_at11/113+33485397..33489986galactosyltransferase family protein, putative, expressed
LOC_Os03g58930NANA3+33492522..33495095expressed protein
LOC_Os03g58940OsAffx.3640.1.S1_at9/113+33502713..33505138Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58960Os.15684.1.S1_at11/113+33509487..33515062DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23190.1.A1_at--701--6371Chr03:33485935..33485959 (25 bp)
GATCCCCTTCGATTGTGTTAGTGGT
LOC_Os03g58920
Os.23190.1.A1_at--193--7431Chr03:33485921..33485945 (25 bp)
GTGTTAGTGGTCATTCTTCTTTGCT
LOC_Os03g58920
Os.23190.1.A1_at--899--9871Chr03:33485897..33485921 (25 bp)
TACATGATGATCCTGAGCCCAAGAT
LOC_Os03g58920
Os.23190.1.A1_at--1013--2951Chr03:33485825..33485849 (25 bp)
AATGGCCATAGTTTCTTGCTTTTCA
LOC_Os03g58920
Os.23190.1.A1_at--23--6311Chr03:33485794..33485818 (25 bp)
GATGACCGTCGAAACTTTCAGCTAG
LOC_Os03g58920
Os.23190.1.A1_at--806--2551Chr03:33485724..33485748 (25 bp)
AACTGCTCAAGGACTTCATCTGTAC
LOC_Os03g58920
Os.23190.1.A1_at--860--6671Chr03:33485669..33485693 (25 bp)
GTTGCTACTCTTGATATGCCTGATT
LOC_Os03g58920
Os.23190.1.A1_at--590--5491Chr03:33485608..33485632 (25 bp)
GAACATCTTGGCGTTTTACTCAATT
LOC_Os03g58920
Os.23190.1.A1_at--57--5671Chr03:33485545..33485569 (25 bp)
GACATGTATTTAGTTCTGGCTGCAA
LOC_Os03g58920
Os.23190.1.A1_at--22--6571Chr03:33485466..33485490 (25 bp)
GATTCAGGTTGTATCGCTGCAGCTC
LOC_Os03g58920
Os.23190.1.A1_at--1067--4751Chr03:33485451..33485475 (25 bp)
GCTGCAGCTCGAGTGTTCATACGTA
LOC_Os03g58920
Target Sequence 
GATCCCCTTCGATTGTGTTAGTGGTCATTCTTCTTTGCTACATGATGATCCTGAGCCCAAGATCGAAGGACTGTTTTGCG
ATGATAAATTAAGTCCNCAGATGACTAACAAATGGCCATAGTTTCTTGCTTTTCATGTAGAGATGACCGTCGAAACTTTC
AGCTAGAAACCAACTCAGGGAATGAATACGAAGTTCAGTGGGCACTAATAGAACTGCTCAAGGACTTCATCTGTACATGT
GAAGGGTAGAAAGCTTAGTTGAAATTGTTGCTACTCTTGATATGCCTGATTGTGGTTGAAAGTCATGAACAACCCATCAG
GTACGTAGAACATCTTGGCGTTTTACTCAATTTGTCGCAGAATTTTTGATTTGACATGGTCATAAGTTATGACATGTATT
TAGTTCTGGCTGCAAACATCTTGCATGAGTTCATGGAGTATCAGATTTTTCTTTTCNTTCTTGTTTTTAGATTCAGGTTG
TATCGCTGCAGCTCGAGTGTTCATACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23190.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis